Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04760 372 / 9e-133 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 355 / 4e-125 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04750 347 / 6e-123 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 343 / 3e-121 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT4G15780 302 / 6e-105 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT3G54300 287 / 5e-99 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G33110 268 / 1e-91 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT5G11150 159 / 9e-49 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 149 / 9e-45 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 146 / 1e-43 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011737 [exp] 401 / 2e-144 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 374 / 2e-133 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 373 / 6e-133 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 369 / 2e-131 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 367 / 1e-130 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 363 / 6e-129 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 352 / 9e-125 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 347 / 6e-123 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 345 / 4e-122 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177700 [exp] 360 / 4e-128 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.002G240900 [exp] 353 / 2e-125 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 351 / 2e-124 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G050400 [exp] 343 / 3e-121 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 343 / 4e-121 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.010G239900 [exp] 299 / 2e-103 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 293 / 3e-101 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.008G209100 [exp] 290 / 3e-100 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.009G018900 [exp] 149 / 4e-45 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.001G219200 [exp] 145 / 2e-43 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10000754 pacid=23148776 polypeptide=Lus10000754 locus=Lus10000754.g ID=Lus10000754.BGIv1.0 annot-version=v1.0 ATGGCGGGGCAACAGACGTTGATCTACAGTTTTGTGGCTAGAGGGACGGTGATCCTGGCAGACTACACCCAATTTAGCGGCAATTTCACCACCATCGCCG CTCAATGCCTTCAAAAGCTCCCTTGTACCAATAACAAGTTCACCTACAATTGCGACGGCCACACCTTCAACTATCTCGTCGAAAATGGCTTCACCTACTG CTTGGTTGCTTCTGAATCGGCGGGAAGACAGATCCCGATTGGGTATTTGGAGAGGATTAAAGATGAGTTCAGCAACAAATATGGTGGCGGCAAAGCTTCT ACGGCAAAGGCTAATAGTCTCAAGAAAGAGTTTGGGCCGAAGCTCAAGGAACATATGCAATACTGTGTGGATCATCCAGAAGAGATCAACAAAATGGCCA AAGTTAAGGCTCAGGTTACTGAGGTCAAAGGTGTTATGATGGAGAACATTGAGAAGGTTCTTGATCGCGGTGAGAAGATTGAACTTCTGGTGGATAAGAC TGACAATCTCCGGTTACAGGCACAAGACTTCAAACAACAAGGAACCAAGATAAAAAGAAAGATGTGGTACGAGAACATGAAGATGAAACTCATTGTCTTT GGCATCTTCGCAGCACTAGTTCTTCTGGTTTGGCTATCCATTTGCCATGGCTTCAAGTGTCGCTAA
AA sequence Show only first row Show all	>Lus10000754 pacid=23148776 polypeptide=Lus10000754 locus=Lus10000754.g ID=Lus10000754.BGIv1.0 annot-version=v1.0 MAGQQTLIYSFVARGTVILADYTQFSGNFTTIAAQCLQKLPCTNNKFTYNCDGHTFNYLVENGFTYCLVASESAGRQIPIGYLERIKDEFSNKYGGGKAS TAKANSLKKEFGPKLKEHMQYCVDHPEEINKMAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTDNLRLQAQDFKQQGTKIKRKMWYENMKMKLIVF GIFAALVLLVWLSICHGFKCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	0	1
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	1.7	0.9153
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	4.0	0.8934
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	7.3	0.8854
AT5G12000			Protein kinase protein with ad...		Lus10008466 [exp]	8.1	0.8387
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	9.2	0.8759
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	9.2	0.8621
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	10.1	0.8690
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10037072 [exp]	11.4	0.8700
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	12.4	0.8508
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	12.7	0.8686

Compare expression of checked genes

Lus10000754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.