Plant FIBer expression Database

Lus10000756 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13690 55 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032805
[exp]
64 / 7e-13 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G177900
[exp]
126 / 7e-35 AT4G13690 106 / 3e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10000756 pacid=23148775 polypeptide=Lus10000756 locus=Lus10000756.g ID=Lus10000756.BGIv1.0 annot-version=v1.0
ATGAAATCAAACAACAACGCAATCAGGCCTTTGGGCCAGAGAGCCATTCCTCCGTCCTTCATTTTCCCTTCCTCAAACTGTGCCCAGGATTTAGAGTCCC
CCCGCGAGCGGAGTAAAGATGGTACCGGGAACACTCGGGTATCGCTCTCTGATTTCCTCAACAAGAAGCTGCAGAAAACCGAGGCTCGGTCCAGATCAGT
CAAGGGGAAGTCCCAACCTTTTCTATCGCCTTTAGGTCGTAAAACTGACAGCTGCAGTGGCAGCCGCTCAAACGATGTCTGGGTTGGATCCAAGCTCGAA
GATAAAGAGAAGAAATCAGAAGTGGATGAAGTGGTTTTCCAGCAGTTTAAGAAGCCTGATGTTGGAGAAATGGGTAATGGCATTGATTTGTGTAGAGACG
GACCAGCTAGTGCCATCGGAAGTGGAGCTGTTTCCAGCAATTCGCATACTGTAGAATCTTGTCCTGTCGGCAAATGGGGAGCTTCTGAATCACAATATTT
GCAGGGAACAGGGTTGCAAGCTCGTGAGCAGAAGCATGCTGCTGGTCCTAAACGGCCATTGGTGGTTGGATATGCTCAACCAGGCAGACAAAAACCAGCA
CAAGAGAGACTCGGTAGCAAGAGAAAACGAAGCAAACCGTACAATCATTATGCAAATGGACATGGGTGGTGGGACTGCGACATGGAAGGTTTTGATTCAG
GTGAAGTAGGCATAGGGGAAGTGTGGGAAGGAGTTGGATCTTCAACTCTCGGTGGAATAGAGTGGCACTGA
AA sequence
>Lus10000756 pacid=23148775 polypeptide=Lus10000756 locus=Lus10000756.g ID=Lus10000756.BGIv1.0 annot-version=v1.0
MKSNNNAIRPLGQRAIPPSFIFPSSNCAQDLESPRERSKDGTGNTRVSLSDFLNKKLQKTEARSRSVKGKSQPFLSPLGRKTDSCSGSRSNDVWVGSKLE
DKEKKSEVDEVVFQQFKKPDVGEMGNGIDLCRDGPASAIGSGAVSSNSHTVESCPVGKWGASESQYLQGTGLQAREQKHAAGPKRPLVVGYAQPGRQKPA
QERLGSKRKRSKPYNHYANGHGWWDCDMEGFDSGEVGIGEVWEGVGSSTLGGIEWH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G13690 unknown protein Lus10000756
[exp]
0 1
AT3G27360 Histone superfamily protein (.... Lus10031821
[exp]
1.4 0.9607
AT1G69770 CMT3 chromomethylase 3 (.1) Lus10017720
[exp]
3.7 0.9503
AT1G08880 HTA5 ,G-H2AX ,G... histone H2A 5, gamma histone v... Lus10028044
[exp]
4.2 0.9486
AT5G23420 HMGB6 high-mobility group box 6 (.1.... Lus10013453
[exp]
4.5 0.9470
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Lus10028544
[exp]
5.5 0.9405
AT3G54560 HTA11 histone H2A 11 (.1) Lus10018753
[exp]
5.9 0.9466
AT5G65360 Histone superfamily protein (.... Lus10012744
[exp]
6.7 0.9415
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10021408
[exp]
7.9 0.9441
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10013544
[exp]
8.0 0.9417
AT5G12360 unknown protein Lus10038810
[exp]
8.8 0.9457

Lus10000756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.