Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24180 1481 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT5G49900 898 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 832 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 818 / 0 Beta-glucosidase, GBA2 type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003517 [exp] 857 / 0 AT5G49900 1191 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10002950 [exp] 853 / 0 AT5G49900 1216 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10023340 [exp] 792 / 0 AT5G49900 1217 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10038471 [exp] 762 / 0 AT5G49900 1201 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10038469 [exp] 0 / 1 AT5G49900 223 / 1e-69 Beta-glucosidase, GBA2 type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G178000 [exp] 1577 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2) Potri.003G003400 [exp] 891 / 0 AT5G49900 1298 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.004G227200 [exp] 890 / 0 AT5G49900 1284 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.019G072800 [exp] 869 / 0 AT5G49900 1219 / 0.0 Beta-glucosidase, GBA2 type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF04685 [flax] [poplar] DUF608 Glycosyl-hydrolase family 116, catalytic region CL0103 [flax] [poplar] Gal_mutarotase PF12215 [flax] [poplar] Glyco_hydr_116N beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Representative CDS sequence Show only first row Show all	>Lus10000757 pacid=23148777 polypeptide=Lus10000757 locus=Lus10000757.g ID=Lus10000757.BGIv1.0 annot-version=v1.0 ATGGTCACCGGCACTTTGTTTCACCGTAGAAAGCATTCATGGCCACCCGAGGAGTTCATCAACAAAGCGACCTTGCAATTGTTTGATTTTGATAGTGCTG CGCCTCCAGAACAAGCCTGGAGACGTAAATTGAACAGTCATGCCAATTTACTCAAAGAATTTAGTGTTACGTTTGCAGAGGCAATAAAGATGGTAGGACT CGGTATACGCCTATGGTCCTATGTCAGAGAGGAGGCCTCACATGGAAGGAAAGCACCGATAGATCCCTTCACTAGGGAAAGTTGCAAACCATCGGCATCT CAAGGGGTTCCGCTAGGAGGAATGGGAAGCGGAAGCATATCCAGAGGTTTTAGGGGAGAGTTCAGACAGTGGCAAATTGTGCCTGGTTCAAATGAACCTT CTCCTGTCATGGCTAATCAGTTCTCTATATTTGTTTCGCGGGACGGAGGAAATAAAAGCTATGCATCTGTCTTGGCTCCTGGGCAGCATGATTGTATAGG GAAACCTCGTGATCATGGTATATCGTCATGGGACTGGAACCTAAATGGCCAGCATTCTACATACCATGCACTTTTTCCAAGGGCTTGGACAGTATATGAT GGTGAACCAGACCCAGACTTGAAAATCTCTTGCAGACAAATATCACCATTCATACCACATAACTATAGAGAGAGTAGTCTTCCCACTGCAGTTTTTGTAT ACACGTTGGTAAACACGGGTAAAGAAAGAGCAAAAGTTAGCCTGCTTTTCACATGGGCGAATTCTGTTGGAGGTGTCTCGCATTTATCAGGAGATCACAT GAATGAACCATTTGTGACTGCAAAGGGCAACCCTCCTGTTACCTTTGCGGTTGGTGCATGTGAAACACAGAATGTCAATGTGTCTGTTCTTCCATGCTTT GGGTTGTCTGAAGGGAGCTACGTCACTGCAAAGAACATGTGGGCTCAGATGGCGAAGGATGGGCAATTTGACAGAGAGAACTTAAATTCTGGACCAAGCA TGCCTTCATCGGCCGGAGAGACGCTATGTGCTGCAGTTTCTGCTGACACATGGGTAGAACCTCAAGGAAAATGCACAATTGCATTTGCTCTCGCTTGGTC ATCTCCAAAAGTGAGATTTAAGAAGGGAAGCTCCTACAACAGGAGATATACAAAGTTCTACGGTACTTCTGAGAGAGCGGCACAGAAATTGGTTCATGAT GCATTGACAAATTACAAAAAATGGGAAGAGGACATAGAAAAGTGGCAAAATCCTATCCTTAAGGATGAAAGACTACCAGAATGGTATAAGTTCACTTTGT TTAATGAGCTCTACTTTTTGGTGGCTGGTGGAACAGTTTGGATTGACGCCACCCTGCCGGAAAGAGTGGCAAATGGTCGTTGCCCGCCAATCGCTGAAGA AGGCGCAGTTGTTGTCAAACACGACGCAGTTGATGGCTCTAGCGTGCACAGTGGTAGCGCAGAAGATAGTGATGGATCATCTCATGAAGAACACCCATCT GCTGATGAGCCGCAAGTAGTTGACGATGAAAGGATAACTAACCATTCGTTACATCCTCTTGCAGTACCGGACCCTTTTATTGATAGTGATGATGTCGGTA GGTTTCTCTATTTGGAAGGAGTCGAATATATTATGTGGTGCACTTATGATGTCCACTTCTATGCATCATTTGCCCTCTTGGAACTGTTCCCCAAAATTGA ACTCAGTATTCAGCGGGAGTTTGCTAAAGCTGTGTTATGCGAGGATGGAAGGAAGGTCAAATATCTCGCTGAGGGCAATGTTGGAATTCGTAAGGCGAGA GGTGCCATTCCTCATGACCTCGGAACACATGATCCCTGGAATGAAATGAACGCATACAACATTCATGATACAAGCAAGTGGAAGGATTTGAACCCGAAGT TTGTACTTCAGGTGTACAGGGACTTTGCTGCAACAGGGGATATGTCTTTTGGAGTTGATGTATGGCCTGCAGTTCGTACCGCCATGGAATACATGGAACA GTTTGACAAAGATGATGATGGTCTGATTGAGAATGACGGGTTCCCAGATCAAACATATGATACTTGGACTGTCCATGGAGTCAGTGCCTACTGTGGTGGC CTTTGGCTAGCTGCTCTTCAAGCCGCAGCTGCAATGGCCCTTCAATTAGGCGATAAATATTTTGCTGAACTTTGTAAAAGCAAATTTGTGAAGGCGAAAG CAGCATTTGAATCAAAACTATGGAACGGTTCGTATTTCAATTATGACAGTGGGTCAAGTGGAAACAGCAAGTCAATACAAGCAGATCAGCTGGCTGGGCA GTGGTATACTGCATCTTCAGGATTGCCGCCGCTTTTTGATGAAATCAAGATCAAAAGTGCTCTCCAGAAAATCTATGATTTCAATGTCATGAAAGTTAAA GGTGGCAAGATTGGAGCTGTAAATGGAATGCATCCAAACGGAAAGGTGGATGAGACGTGTATGCAGTCTCGTGAAATATGGACTGGTGTTACCTATGGCT TGGCAGCTACGATGATCCTTGCTGGGATGGAGGACCAGGCATTTGCTACTGCTGAGGGCATTTTCACTGCTGGCTGGTCTGAGCAAGGCTACGGGTACTG GTTCCAAACACCAGAAGGGTGGACCGTGGATGGACACTACCGGTCTCTTATCTACATGAGGCCACTTTCGATTTGGGGGATGCAATGGGCACTGTCACTA CCAAAAGCAATTCTTGACGCTCCAAAGATAAACATAATGGAGAGACTGCTCCTGTCTCCGAGTGCGAGATTCTCGCAAAACGAAAGCGGAGTGAGGAGGA TAGCGGCAAAAGCAAAGTGCTTTGGGAATTCAGTCTTTAAATGTGCCTGCTGA
AA sequence Show only first row Show all	>Lus10000757 pacid=23148777 polypeptide=Lus10000757 locus=Lus10000757.g ID=Lus10000757.BGIv1.0 annot-version=v1.0 MVTGTLFHRRKHSWPPEEFINKATLQLFDFDSAAPPEQAWRRKLNSHANLLKEFSVTFAEAIKMVGLGIRLWSYVREEASHGRKAPIDPFTRESCKPSAS QGVPLGGMGSGSISRGFRGEFRQWQIVPGSNEPSPVMANQFSIFVSRDGGNKSYASVLAPGQHDCIGKPRDHGISSWDWNLNGQHSTYHALFPRAWTVYD GEPDPDLKISCRQISPFIPHNYRESSLPTAVFVYTLVNTGKERAKVSLLFTWANSVGGVSHLSGDHMNEPFVTAKGNPPVTFAVGACETQNVNVSVLPCF GLSEGSYVTAKNMWAQMAKDGQFDRENLNSGPSMPSSAGETLCAAVSADTWVEPQGKCTIAFALAWSSPKVRFKKGSSYNRRYTKFYGTSERAAQKLVHD ALTNYKKWEEDIEKWQNPILKDERLPEWYKFTLFNELYFLVAGGTVWIDATLPERVANGRCPPIAEEGAVVVKHDAVDGSSVHSGSAEDSDGSSHEEHPS ADEPQVVDDERITNHSLHPLAVPDPFIDSDDVGRFLYLEGVEYIMWCTYDVHFYASFALLELFPKIELSIQREFAKAVLCEDGRKVKYLAEGNVGIRKAR GAIPHDLGTHDPWNEMNAYNIHDTSKWKDLNPKFVLQVYRDFAATGDMSFGVDVWPAVRTAMEYMEQFDKDDDGLIENDGFPDQTYDTWTVHGVSAYCGG LWLAALQAAAAMALQLGDKYFAELCKSKFVKAKAAFESKLWNGSYFNYDSGSSGNSKSIQADQLAGQWYTASSGLPPLFDEIKIKSALQKIYDFNVMKVK GGKIGAVNGMHPNGKVDETCMQSREIWTGVTYGLAATMILAGMEDQAFATAEGIFTAGWSEQGYGYWFQTPEGWTVDGHYRSLIYMRPLSIWGMQWALSL PKAILDAPKINIMERLLLSPSARFSQNESGVRRIAAKAKCFGNSVFKCAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	0	1
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	1.0	0.8657
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	2.4	0.8476
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	2.8	0.8524
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	3.2	0.8405
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	6.5	0.8260
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	7.4	0.8003
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	7.7	0.7963
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	8.0	0.8448
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	9.2	0.7991
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	9.8	0.8121

Compare expression of checked genes

Lus10000757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.