Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24170 776 / 0 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G54660 467 / 6e-161 ATGR2, EMB2360, GR glutathione reductase (.1) AT1G48030 156 / 4e-42 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 154 / 2e-41 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G16950 121 / 2e-29 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 114 / 5e-27 dihydrolipoyl dehydrogenases (.1) AT5G03630 45 / 0.0001 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G27820 45 / 0.0001 ATMDAR4 monodehydroascorbate reductase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011734 [exp] 922 / 0 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10018770 [exp] 468 / 2e-161 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 452 / 1e-154 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10037825 [exp] 148 / 5e-39 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 147 / 8e-39 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 142 / 4e-37 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 141 / 1e-36 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 115 / 2e-27 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 115 / 3e-27 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050000 [exp] 803 / 0 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.003G178200 [exp] 793 / 0 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 465 / 2e-160 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.008G100800 [exp] 145 / 5e-38 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.008G107600 [exp] 120 / 4e-29 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.010G142100 [exp] 116 / 9e-28 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.010G151400 [exp] 115 / 9e-28 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.001G099600 [exp] 44 / 0.0002 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0608 [flax] [poplar] Reductase_C PF02852 [flax] [poplar] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10000758 pacid=23148780 polypeptide=Lus10000758 locus=Lus10000758.g ID=Lus10000758.BGIv1.0 annot-version=v1.0 ATGGCTAGAAAGATGCTAATCGACGGAGAGCTGGGCCAGACCAATGCGGCTGACGAGGTTCACTATGATTTCGACTTGTTCGTCATTGGAGCTGGAAGTG GCGGTGTTCGTGCCTCCAGATTCTCCGCTAATTTTGGAGCTAAGAAGGTTGGGATTTGTGAGCTTCCTTTTCATCCTATCAGCTCGGAAGTGATTGGAGG AGTTGGTGGAACTTGTGTTATTCGTGGTTGTGTTCCCAAGAAGATATTGGTGTATGGTGCATCATTTGGAGGTGAACTTGAGGATGCAAGAAATTATGGA TGGGAATTGAGTGAAAACCTTGACTTCAACTGGAAAAAATTGTTGCAGAAGAAGACCGATGAAATACTCAGATTGAATGGAATTTACAAGCGGCTATTGT CGAACGCTGCAGTTAAATTGGCACATCGTCTTGCTATTCCAGGACAGGAGTTGGCAATAACTTCTGACGAGGCCTTGAGCTTGGAGGAACTGCCTAAGCG TGCTGTGGTGCTTGGAGGAGGGTACATTGCTGTAGAGTTTGCTTCTATATGGCGTGGAATGGGTGCTACTGTAGATCTATTTTTCAGAAAGGAACTTCCA TTGAGAGGTTTTGATGATGAAATGAGAGCAGTTGTTGCCAGAAATCTGGAGGGAAGGGGAATTAATTTGCATCCACAAACAAATTTGACAGAGTTGATAA AAACTGAAGAAGGAATCAAAGTTCGCACAGATCATGGTGAAGAATTGGTCGCAGATGTTGTACTCTTTGCTGCTGGACGAATTCCAAATTCGAAGAGATT GAATTTGGAAGCTGTAGGTGTTGAGGTTGATAAGATGGGGGCTATCAAGGTAAATGAGTACTCGCAGACAAACATACCTAGCATATGGGCCATCGGTGAT GTAACAAATCGCATGAATCTTACACCTGTTGCCTTGATGGAGGGAACTAACTTTGCAAAAACTGTTTTTGCTGGAGAACCTACCAAGTCCGACTATGACA ATATACCATGTGCTGTGTTTTGCATACCACCTCTTTCTGTAGTTGGCCTTAGCGAAGAGCAAGCGATAGAACAAGCAGATGGCGATATCCTAGTTTTCAC TTCAAGCTTCAACCCTATGAGGAATACCATTTCTGGGCGCCAAGAGAAGACAGTGATGAAGCTTGTTGTCGATGCTACTACTGATAAGGTCTTGGGAGCT TCCATGTGTGGGCCAGATGCAGCTGAAATTATGCAGGGCATTGCTATTGCGCTCAAGTGCGGAGCAACAAAGGCACAGTTTGACAGCACGATTGGGATAC ACCCTTCTGCTGCGGAAGAATTTGTGACGATGCGATCAGTTAGCAGGCGCGTCGAAGGTGCTAAGAAACCGAAGACGAACCTATAA
AA sequence Show only first row Show all	>Lus10000758 pacid=23148780 polypeptide=Lus10000758 locus=Lus10000758.g ID=Lus10000758.BGIv1.0 annot-version=v1.0 MARKMLIDGELGQTNAADEVHYDFDLFVIGAGSGGVRASRFSANFGAKKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARNYG WELSENLDFNWKKLLQKKTDEILRLNGIYKRLLSNAAVKLAHRLAIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP LRGFDDEMRAVVARNLEGRGINLHPQTNLTELIKTEEGIKVRTDHGEELVADVVLFAAGRIPNSKRLNLEAVGVEVDKMGAIKVNEYSQTNIPSIWAIGD VTNRMNLTPVALMEGTNFAKTVFAGEPTKSDYDNIPCAVFCIPPLSVVGLSEEQAIEQADGDILVFTSSFNPMRNTISGRQEKTVMKLVVDATTDKVLGA SMCGPDAAEIMQGIAIALKCGATKAQFDSTIGIHPSAAEEFVTMRSVSRRVEGAKKPKTNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10000758 [exp]	0	1
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10008170 [exp]	1.7	0.9666
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	6.0	0.9676
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	6.3	0.9665
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10026949 [exp]	6.3	0.9604
AT1G65300	MADS	AGL38, PHE2	PHERES2, AGAMOUS-like 38 (.1)		Lus10022325 [exp]	6.9	0.9473
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Lus10009574 [exp]	7.5	0.9537
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	11.2	0.9636
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	11.9	0.9668
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	14.5	0.9583
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	15.0	0.9584

Compare expression of checked genes

Lus10000758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.