Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13670 296 / 2e-97 PTAC5 plastid transcriptionally active 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011733 [exp] 538 / 0 AT4G13670 368 / 7e-126 plastid transcriptionally active 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049900 [exp] 309 / 2e-102 AT4G13670 318 / 4e-106 plastid transcriptionally active 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain
Representative CDS sequence Show only first row Show all	>Lus10000759 pacid=23148778 polypeptide=Lus10000759 locus=Lus10000759.g ID=Lus10000759.BGIv1.0 annot-version=v1.0 ATGCTGCGCTCTCCTATGTCATCCTCGTCTCCTTTCCTCAATCCCATCCCTCTCAATCCTCCTCTTTCTACCATTCCTCGCCATTTCCATCTACTGCCGC TCTCCAAGTCCTCCATCTCTCTCTGCAAGTCACATGTTTGTTATGCTTCCTCATCCTCGTCCTCTTCCAACTCCAACTCAAGCTCTTCGGGCTCTGATCG CGATGCCTTGCTTTGGCTGCGGGAGGAGCAGCGGTGGCTGCGCGAGGAGCAAAGGTGGCTCCGGGAAGAGCAGAGGTGGTTTCGCGAGAGGGACTCCCTG CTGACTGAGATTCAGTCGTTGAAGCTTCGAATTCAGGCACTAGAGGAGCGGATTTCGATTTCCTCCGGACCTGATGGCTTTCCCGATGCGGGTGCGAATG TCGGGGCACTCTTGCAGGTTCTCAAGGAGAGGAGCCTGATCACCGAGAGCGGATCGAGTGCAAACCCTATCGTTCTGGAAGAAGAGACGAAAGAGAAAGA GGAGACAGCGGAGTCGGCTCCGCCTGCGCTTGTTGTTGAAGTGAAAAGGGAGGAAGAGAAGGTGAGGAAAGCGTTGAAGATGGGAAGCGAAGGCGATGAT GTGCGCGAGATGCAGGAAGCATTGTCAGAACTGGGATTTTATTCAGGAGAAGAAGATATGGAGTACTCCTGGTTCTCCAGTGGGACTGAGCGTGCCGTGA AGACTTGGCAGGCGACATTAAGTGTTCCTGAAGATGGAGTAATGAGCACGGAGCTCCTCGAAAGGCTGTACAAGTCAACCAGGACTGAGGCTGTGACTCA TGAGAGCAACACAGATAAGAAGGCAGACGACACAAAGAGCCATTTCAATCTTCCACTCAAGGAAGATGGCAATGGCGCTGCAGTTGCTTCTGTAACTGAA ATTTCAGAAAACCCGCTGAAAGCTGTGAAGGAAGAAGGTGCGAGAGAAGCAGGGATGTCCAAGCACAGAGTGTTTCTGCTTGGTGAAAATAGGTGGGAGG AACCCTCGAGACTCGTTAGCAAGAGCAAAGAAGCCAATGTAAATACGGTGAGGAAGGTGACAAAGTGCCTTACTTGTCGTGATGAGGGCCGTTTATTGTG CCTAGAATGTGATGGAACAGGGGAACCGAACATCGAACCGCAGTTTCTGGAGTGGATAGGAGAAGACACCAAGTGTGCATATTGTGAAGGTCAGGGGTTT ACAACGTGTGATGCATGTCAAGGCAAAACAGTATCCTAG
AA sequence Show only first row Show all	>Lus10000759 pacid=23148778 polypeptide=Lus10000759 locus=Lus10000759.g ID=Lus10000759.BGIv1.0 annot-version=v1.0 MLRSPMSSSSPFLNPIPLNPPLSTIPRHFHLLPLSKSSISLCKSHVCYASSSSSSSNSNSSSSGSDRDALLWLREEQRWLREEQRWLREEQRWFRERDSL LTEIQSLKLRIQALEERISISSGPDGFPDAGANVGALLQVLKERSLITESGSSANPIVLEEETKEKEETAESAPPALVVEVKREEEKVRKALKMGSEGDD VREMQEALSELGFYSGEEDMEYSWFSSGTERAVKTWQATLSVPEDGVMSTELLERLYKSTRTEAVTHESNTDKKADDTKSHFNLPLKEDGNGAAVASVTE ISENPLKAVKEEGAREAGMSKHRVFLLGENRWEEPSRLVSKSKEANVNTVRKVTKCLTCRDEGRLLCLECDGTGEPNIEPQFLEWIGEDTKCAYCEGQGF TTCDACQGKTVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	0	1
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10034438 [exp]	1.0	0.9525
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10001339 [exp]	3.0	0.9361
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10022384 [exp]	4.2	0.9295
AT1G54520			unknown protein		Lus10015939 [exp]	4.5	0.9351
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	6.9	0.9436
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	7.7	0.9356
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	9.2	0.9127
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036600 [exp]	14.0	0.9138
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10039079 [exp]	15.4	0.8757
AT3G05410			Photosystem II reaction center...		Lus10004498 [exp]	16.7	0.9226

Compare expression of checked genes

Lus10000759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.