Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24160 234 / 3e-74 PMP putative type 1 membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049800 [exp] 343 / 2e-116 AT3G24160 304 / 2e-101 putative type 1 membrane protein (.1) Potri.003G178400 [exp] 337 / 4e-114 AT3G24160 295 / 7e-98 putative type 1 membrane protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000760 pacid=23148781 polypeptide=Lus10000760 locus=Lus10000760.g ID=Lus10000760.BGIv1.0 annot-version=v1.0 ATGATGGTGTTACGCGTTCTTACCGCCCTTCTTCTCGTCTCTTCTGTTTTCTGCTCATCTGCCAAGGCAGAAAGCAGTGGAACGGTTTTGTTCATCGATG GCCACGACCACCGATACCTTCGCTCTCAATCGACAATTGATGGCATCCAGCCATTGTCGATCCCAGAAGTTTCTGATGCGGTGTCTGTTTTGCTTGGTTT TGCACCATCCACTGCACTTTCAGCAGCTGGTTCAGCTAAGTTGAATGGTGTTCTCATGCCCAATCCATTTGATCGGCCACATGCTGTCTTCATGTTGGAA GTTACTGGAATGAAAGATCTCCCTCATGCAGAGATCTCTGCAGTTGAGAAGTTCAGCCAGGCTCTGCAGAGAAAGGCGACTTTTGGTTCAGAAAAAGCTC AAATTGAACTTCCAGGTGAAGAAGTCTCTGTTGTTTATTTGGATGATGGCTTAACAGATGCCACAGAAAAGGAAATAAGTGATCTTGCATCTTTGTTCGG GGGATCATATGTTGCTGACACTTCAAGAGCAATGAATGGGAACTTTGAGATCTCTTTGCCTAGCGGGACCATGAATCTTCATATGTCAAAGGATACCGAC AGGAATTTTGTATTGAGTCTATTGGCTCTGATGCGAAATAGCAAAAAGGCAACACTGATGCACGAAGATCTCTCTAAGGGCACCCAGAGACCTGCAGAGC TTACGATTGGTTGCTTTGATGGCATTAAGGCTTTGCAAGAGCAATACGGAACAGGACATATTGTGCAGCAAGGCGAGGAGCTGTTAGTTAGCGTACTGTC TCTAGTGCTTGATTACTTGCAGGCAGCATATAAAGGTCAACTTGTTGCTGTTGTTTCCTTTAAGCCAGAATCAGAAACAAAGTTGGAAGTGGTGCTGACT GATTGGCCATCTGCACGTTTGTTGGCTGAAACCAATGTAGCCCCTGCAGTTAATGTCACCACCATTCTGGAGGTGGCCTTGGTCAGAACGACCTTGGCTT GGTTGACAGGAATTATTCTTCTCATTTCTACTCTAATCGGGGTGTGCATGCTTCTGAATATGCCACTCACAAGGGACACCCTTCTCTACTCCAATGTGAA GCTCGACTAA
AA sequence Show only first row Show all	>Lus10000760 pacid=23148781 polypeptide=Lus10000760 locus=Lus10000760.g ID=Lus10000760.BGIv1.0 annot-version=v1.0 MMVLRVLTALLLVSSVFCSSAKAESSGTVLFIDGHDHRYLRSQSTIDGIQPLSIPEVSDAVSVLLGFAPSTALSAAGSAKLNGVLMPNPFDRPHAVFMLE VTGMKDLPHAEISAVEKFSQALQRKATFGSEKAQIELPGEEVSVVYLDDGLTDATEKEISDLASLFGGSYVADTSRAMNGNFEISLPSGTMNLHMSKDTD RNFVLSLLALMRNSKKATLMHEDLSKGTQRPAELTIGCFDGIKALQEQYGTGHIVQQGEELLVSVLSLVLDYLQAAYKGQLVAVVSFKPESETKLEVVLT DWPSARLLAETNVAPAVNVTTILEVALVRTTLAWLTGIILLISTLIGVCMLLNMPLTRDTLLYSNVKLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	0	1
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	1.7	0.8964
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10013020 [exp]	2.0	0.8667
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	2.2	0.8342
AT3G51580			unknown protein		Lus10025140 [exp]	3.5	0.8501
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	4.0	0.8361
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	4.5	0.8141
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10031990 [exp]	5.5	0.8244
AT1G11440			unknown protein		Lus10018397 [exp]	6.5	0.7930
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	7.7	0.7942
AT5G35080			unknown protein		Lus10008819 [exp]	10.2	0.8171

Compare expression of checked genes

Lus10000760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.