Plant FIBer expression Database

Lus10000761 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10000761 pacid=23174695 polypeptide=Lus10000761 locus=Lus10000761.g ID=Lus10000761.BGIv1.0 annot-version=v1.0
ATGAGGGAAGCTGGACTGGAAGGGTTTTCGGGGAAATCTGCCCTTTGGACCTCAAATAACAACTCTGGTGTGCAACATGGGAGTGGACATGCTTGGCCTC
TCCATGACCACACCGATTTCTGGATTCGACCTCCTGCTCTGTCACCCATCATACACGCAGGGGGAGAAACAGATGATGATGAGGCTCAAATCTCACCATT
ATCTCTGGCTGATCCTCGCAAGTATGAGAATGACGAAGTCCCTGCCGACTATGAAGAAGTCGAAAATGATGAAGAACATACCGAAGTGTTTGATCCCAAT
CTTGTTGGAGATTCAATTCCTACTCATAGAACAAATCTGAACAAGGTCAAGCAAGAATCGAATGACGATCAAAAGGTTGTTGTGAAAGTATCTAGACGAA
CTCTCCCAGGAATTAACCACTCATGGTGGGTAGATGAAGAGCTGGCTGTAGCTGAGGCTGAACTCCTGACATTCAAAGAACGTCACGCTTCTTCTTCGGT
GAGGTTGGTCGCCGCTGGCGAACTCTGCCCAGGTTCCGGCGAGTGCCCGGTGAGCTCCAAACCTCTTGGAACCACCGCCAATCCGCCCCAAATCCTTCGT
CGGATGCCTCGGAGTCCCTTCCGCTGCTTCTCCCGCGTTCCACCGTCGTCTACAGCAGTGGAGAGCCCCACTGCCGTCTCCACTGCTCTGTACCCTCCGT
CGACGAGACTGCGCCTTCGTCGAACGTTGTCGAGATCACATCAATCGCCACCACGCCCTGATCTTCTTCCTCCTCTCAATCCGACCCCAAGCAGGCGCTC
CTCCGCTCTCTCTCCCCTGGAAATCCGACGATCTTCTTCTTCCTTACATCGAGCGCCGCTTTAA
AA sequence
>Lus10000761 pacid=23174695 polypeptide=Lus10000761 locus=Lus10000761.g ID=Lus10000761.BGIv1.0 annot-version=v1.0
MREAGLEGFSGKSALWTSNNNSGVQHGSGHAWPLHDHTDFWIRPPALSPIIHAGGETDDDEAQISPLSLADPRKYENDEVPADYEEVENDEEHTEVFDPN
LVGDSIPTHRTNLNKVKQESNDDQKVVVKVSRRTLPGINHSWWVDEELAVAEAELLTFKERHASSSVRLVAAGELCPGSGECPVSSKPLGTTANPPQILR
RMPRSPFRCFSRVPPSSTAVESPTAVSTALYPPSTRLRLRRTLSRSHQSPPRPDLLPPLNPTPSRRSSALSPLEIRRSSSSLHRAPL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000761
[exp]
0 1
AT4G03220 Protein with RNI-like/FBD-like... Lus10018509
[exp]
3.5 0.6292
AT5G01750 Protein of unknown function (D... Lus10020780
[exp]
4.2 0.6094
AT5G47570 unknown protein Lus10008504
[exp]
12.8 0.6763
AT5G59100 Subtilisin-like serine endopep... Lus10040751
[exp]
13.4 0.6272
AT4G14805 Bifunctional inhibitor/lipid-t... Lus10010576
[exp]
16.0 0.5736
AT4G18260 Cytochrome b561/ferric reducta... Lus10042834
[exp]
17.2 0.6041
AT4G18040 LSP1, CUM1, AT.... eukaryotic translation Initiat... Lus10002785
[exp]
23.7 0.6332
AT1G27070 5'-AMP-activated protein kinas... Lus10030802
[exp]
27.7 0.6074
AT5G55930 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10004237
[exp]
28.9 0.5719
AT3G61650 TUBG1 gamma-tubulin (.1) Lus10010985
[exp]
35.1 0.6168

Lus10000761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.