Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59420 1217 / 0 ACR4 crinkly4 (.1) AT3G09780 356 / 4e-110 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT2G39180 334 / 7e-102 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT5G47850 326 / 4e-99 CCR4 CRINKLY4 related 4 (.1) AT3G55950 261 / 8e-75 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT3G04690 260 / 5e-74 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT3G58690 247 / 2e-73 Protein kinase superfamily protein (.1) AT5G39000 256 / 1e-72 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 255 / 2e-72 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G07070 242 / 1e-71 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015956 [exp] 1622 / 0 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10029170 [exp] 348 / 9e-107 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10036524 [exp] 345 / 5e-106 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10041404 [exp] 345 / 7e-106 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10018242 [exp] 294 / 1e-86 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10012995 [exp] 255 / 2e-78 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10038595 [exp] 249 / 2e-74 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028285 [exp] 255 / 2e-72 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10040663 [exp] 254 / 2e-72 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128400 [exp] 1348 / 0 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.017G029900 [exp] 1338 / 0 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.010G221200 [exp] 384 / 1e-120 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.016G089200 [exp] 369 / 4e-115 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.019G078300 [exp] 335 / 5e-102 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 286 / 4e-84 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.001G252400 [exp] 266 / 1e-76 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.008G068700 [exp] 265 / 5e-76 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 261 / 8e-75 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.010G052800 [exp] 254 / 2e-71 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10000764 pacid=23171870 polypeptide=Lus10000764 locus=Lus10000764.g ID=Lus10000764.BGIv1.0 annot-version=v1.0 ATGTTGTCATTCATATCAGCTCTAGGATCAATGTCCTCCATCGCTATCTCCTATGGAGACAAAGGTTCTGTTTTCTGTGGTCTCAAGTCCGATGGATCCC ATTTAATCACCTGTTATGGTTCAAACTCAGCTGTAATCTATGGAACACCACTTCACTTCCCTTTCATTGGAGTCACCGCTGGTGATGGCTTTGTCTGTGG GCTTCTTTTGGACTCAAACCAACCTTATTGCTGGGGAAGTAGTGACTACATTCAAATGGGTGTCCCCCAACCGATGCTCAAAGATGCTGAGTATGTAGAA ATCAGTGCAGGTGATTACCATTTATGCGGCTTGAGGAAGCCCTTGACTGGCAGGCTCAGGAATTACTCTCTTGTTGATTGTTGGGGTTACAACATGACCA ACAGCCACCAGTTTGATGGTCAAATCAAGTCGATTTCAGCTGGCTCAGAGTTCAACTGTGGCTTGTTTTCTCAGAACAGCACGGTGTTCTGTTGGGGTGA TGAGACTAGCAGCAGAGTTATCAGCCTCATTCCCAAGGAAATGAGGTTTCAAGAGATTTCTGCTGGTGGCTATCATGTATGTGGTATTCTTGAAGGAATT AACTCTAGACCCTTTTGCTGGGGAAGGAGCTTGGAGCTTCAAGACGATATATCGTTGATAGACAACAACAATTCTGGTGGGGATTTCCCTCCAACTGATC CATTGATTTCAGTGGTTGGAGGCAAGTTCCATGCTTGTGGGATCAAGAGCAATGACCGTGGAGTTATCTGCTGGGGGTTTGCTTTGAAGAGAAGCACACC ACCTCCTAAAGGCATTAAGGTTTACCAGATTGCTGCTGGGAATTACTTCACTTGTGGAATTCTTGTTCAAAAAGACCTTTTGCCTGTATGTTGGGGGCTT GGATTTCCCACTACTCTCCCAGTACCTGTCTCACCTGGTTTGTGCATAACTGCTCCTTGTACACTTGGAACCTATGAGCTTACCCCTGACATCAATGCAC CCTGTAAGGCTATTCCTTTCTCTCATGTCTGCTTGCCTTGCACCAACGGTTGTCCTTCTGAAATGTATCAGAAATCTCAATGCACACTGAAATCAGATCA CAAATGTGAGTACAACTGTTCAGGATGTTATTCAGCAGAATGCTTCTCAAAATGTTCTTCTAACGTGAAAAAGAATGAGAGGGTTTGGTCATTGCAGCTC CCTGTAATTATTGCAGAGGTTTCCTTTGCTGTATTCTTGGCAATCATTGTATCTACGATTGCTGTTTTATATGTCCGGTACAGGTTGAGGAACTGTCGTT GCTCAGCTGCTAAGAAGAGCAGCAATGGAAAAGGGGGTTCCTCGTTGTTGCAGAAAGAGAATGGGAAGATCCGACCAGATATGGATGAGCTGAAGCTAAC AAGGAGGGCGCAGATGTTCAGCTATGACGAACTTGACAAGGCAACCAATGGTTTCAAAGATGAATCATTGGTAGGGAAAGGTAGCTTCTCATGTGTGTAC AAAGGCGTTCTCAAGGATGGGACTATGGTTGCTGTAAAAAAGGCAATTGTATCTTCAGATAAGCAGAAGAACTCCAAAGAATTCCACACCGAGCTTGATC TACTATCGAGGTTGAATCATGCACATTTGCTCAACTTACTGGGTTACTGTGAAGAAGGTGGTGAAAGGCTTCTTGTATATGAATTCATGGCTCATGGATC TTTACACCAGCACCTTCATGGGACGAACAAGGCATTGAGACAACAACTAGATTGGATTAGAAGGGTGACGATTGCAGTCCAAGCAGCTCGCGGAATTGAA TACCTGCATGGATATGCTTGTCCTCCAGTGATTCATCGCGACATCAAGTCATCGAACATACTCATCGACGAAGAGCACAATGCACGAGTGTCTGATTTTG GTCTTTCTTTGCTAGGACCAGTTGATAGCAGCTCTCCACTGGCTGAGTTGCCTGCAGGGACACTGGGATACCTTGATCCTGAGTATTACAGGCTTCACTA CCTGACGACCAAGTCTGACGTATACAGCTTTGGGGTGCTGCTTCTTGAGATATTGAGTGGGAGAAAGGCTATTGATATGCAGTGTGAAGAAGGGAACATA GTAGAATGGGCTGTTCCGTTGATCAGAGCAGGAGATACATCGTCCATCTTGGACACAGTCCTAAAGCCACCGTCTGATTTGGAAGCATTGAAAAGAATAG CCAATGTGGCTTGCAAGTGCGTTAGGATGAGAGGGAAAGAAAGACCATCCATGGACAAGGTGACCACAGCATTGGAACGTGCATTGGCTCAGCTGATGGG GAGTCCATGCTACGAGCAGCCGATACTGCCAACTGAGGTGGTGCTAGGTAGCAGCCGGATGCACAAGAAATCGTCGCAGAGGTCATCAAACAGGTCTGGT TCAGAGACAACCGAAGTTGTGGTGATGGAAGGGGGGGAAGAGCAGAGGATTGAGTTGAGAGCTCCTTCATGGATAACGTTTCCAAGCGTGACATCTTCTC AAAGGAGGAAGTCGTCGGTCTCGGAGGCAGATGTTGATGGTAAAGCTTCAGAAGCAAGGAACGTAGTACTAAGTGCAGGATGCGGAGGAGGGGATGGGTT AAGGAGGTTAGAGGAAGAGATTGGTCCTGCTTCTCCTCCGGAAAATCTGTACCTGCAGCATAATTTCTGA
AA sequence Show only first row Show all	>Lus10000764 pacid=23171870 polypeptide=Lus10000764 locus=Lus10000764.g ID=Lus10000764.BGIv1.0 annot-version=v1.0 MLSFISALGSMSSIAISYGDKGSVFCGLKSDGSHLITCYGSNSAVIYGTPLHFPFIGVTAGDGFVCGLLLDSNQPYCWGSSDYIQMGVPQPMLKDAEYVE ISAGDYHLCGLRKPLTGRLRNYSLVDCWGYNMTNSHQFDGQIKSISAGSEFNCGLFSQNSTVFCWGDETSSRVISLIPKEMRFQEISAGGYHVCGILEGI NSRPFCWGRSLELQDDISLIDNNNSGGDFPPTDPLISVVGGKFHACGIKSNDRGVICWGFALKRSTPPPKGIKVYQIAAGNYFTCGILVQKDLLPVCWGL GFPTTLPVPVSPGLCITAPCTLGTYELTPDINAPCKAIPFSHVCLPCTNGCPSEMYQKSQCTLKSDHKCEYNCSGCYSAECFSKCSSNVKKNERVWSLQL PVIIAEVSFAVFLAIIVSTIAVLYVRYRLRNCRCSAAKKSSNGKGGSSLLQKENGKIRPDMDELKLTRRAQMFSYDELDKATNGFKDESLVGKGSFSCVY KGVLKDGTMVAVKKAIVSSDKQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGTNKALRQQLDWIRRVTIAVQAARGIE YLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPVDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQCEEGNI VEWAVPLIRAGDTSSILDTVLKPPSDLEALKRIANVACKCVRMRGKERPSMDKVTTALERALAQLMGSPCYEQPILPTEVVLGSSRMHKKSSQRSSNRSG SETTEVVVMEGGEEQRIELRAPSWITFPSVTSSQRRKSSVSEADVDGKASEARNVVLSAGCGGGDGLRRLEEEIGPASPPENLYLQHNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	0	1
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10002089 [exp]	2.0	0.8833
AT5G66770	GRAS		GRAS family transcription fact...		Lus10024014 [exp]	4.5	0.8464
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	6.9	0.8683
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	7.3	0.8767
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	7.5	0.8522
AT5G01790			unknown protein		Lus10030550 [exp]	7.7	0.8376
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	8.5	0.8324
AT3G59420		ACR4	crinkly4 (.1)		Lus10015956 [exp]	9.5	0.8534
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	9.8	0.8673
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	12.0	0.8431

Compare expression of checked genes

Lus10000764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.