Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49710 256 / 3e-86 unknown protein AT4G24590 227 / 1e-74 unknown protein AT1G44770 58 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015965 [exp] 436 / 5e-157 AT5G49710 274 / 2e-93 unknown protein Lus10014131 [exp] 48 / 3e-06 AT1G44770 295 / 6e-101 unknown protein Lus10034500 [exp] 46 / 9e-06 AT1G44770 287 / 1e-97 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104200 [exp] 274 / 6e-93 AT5G49710 263 / 8e-89 unknown protein Potri.005G157500 [exp] 265 / 1e-89 AT5G49710 242 / 7e-81 unknown protein Potri.002G084900 [exp] 62 / 3e-11 AT1G44770 234 / 7e-77 unknown protein Potri.005G176500 [exp] 61 / 9e-11 AT1G44770 247 / 5e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000765 pacid=23171869 polypeptide=Lus10000765 locus=Lus10000765.g ID=Lus10000765.BGIv1.0 annot-version=v1.0 ATGGAAATCGAGGTCTCAGCTCCCAACGTGTCCAAAGGCTGCGTAATTGACAAGGACAAAGGTGTCGACAAATTGAACAAGGATCGCCTTCGCGTTAAGA GGAAGACTTTGCAAGTCGTGTTGGAGCAGTGTCAGAGAGCTCTTGAATCACTCAGCGATGCTGCTGATAATGACGGTGGTGATGATTCGGACGATTACAG TCCGCAGAATTCTCTCCGCGATCCAGAAGCTGATGAGTTATGTGACCTTCTCAAGTCCAGAGTTGAATGCCCTGACTTCCTCGAAAAGCTAGAATCTGCT CAACAGGCTGTTCCAACTGATATGAGCCCTGACCGTGGAGAAGAATGTAGCTCCTGGGACATGGTTAATGAGAATGATCTTTGGGATGGTGAAATGGGTC ATTCAGAAGCAGAAGACTTTGTTCTTGTTCGACAAGAAGATATAGTAGAGGGCATTGCAGGCTTCATGGCTGCTTACCTTTTGTCCCTTAAGCAGACTAA GGTGCGGAACGTTTCTACATTTTCCGCTAACAATGAGCATTGCCCCACAGACCTGACTCCGAATCAACTTCAGGAAGCACTCTGCAAAACATTCTCAGTG AAAAAGAAAAAAGGAAAGCTTCGGAAGGCTTGGGATGGAAGTAAAGTTATATACAACGTGGCTTCTTGGGGGGCAACAGCCATCGGGATATACCAGAACC CGGTGATACTGAGGGCAGCCACTAATGCTTTCTGGACCTCTTGTCACATTATCTCAAAGCTTCTCTGA
AA sequence Show only first row Show all	>Lus10000765 pacid=23171869 polypeptide=Lus10000765 locus=Lus10000765.g ID=Lus10000765.BGIv1.0 annot-version=v1.0 MEIEVSAPNVSKGCVIDKDKGVDKLNKDRLRVKRKTLQVVLEQCQRALESLSDAADNDGGDDSDDYSPQNSLRDPEADELCDLLKSRVECPDFLEKLESA QQAVPTDMSPDRGEECSSWDMVNENDLWDGEMGHSEAEDFVLVRQEDIVEGIAGFMAAYLLSLKQTKVRNVSTFSANNEHCPTDLTPNQLQEALCKTFSV KKKKGKLRKAWDGSKVIYNVASWGATAIGIYQNPVILRAATNAFWTSCHIISKLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49710			unknown protein		Lus10000765 [exp]	0	1
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	1.0	0.9824
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	1.4	0.9761
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10022616 [exp]	3.2	0.9619
AT1G44770			unknown protein		Lus10014131 [exp]	3.5	0.9732
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	4.2	0.9686
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	5.1	0.9540
					Lus10030943 [exp]	6.3	0.9502
					Lus10006539 [exp]	6.8	0.9493
AT4G17960			unknown protein		Lus10000314 [exp]	6.9	0.9585
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	6.9	0.9631

Compare expression of checked genes

Lus10000765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.