Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24610 1453 / 0 unknown protein AT5G65440 1127 / 0 unknown protein AT5G48310 824 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015962 [exp] 2207 / 0 AT4G24610 1476 / 0.0 unknown protein Lus10016071 [exp] 861 / 0 AT5G48310 1328 / 0.0 unknown protein Lus10025189 [exp] 829 / 0 AT5G48310 1258 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104100 [exp] 1752 / 0 AT4G24610 1508 / 0.0 unknown protein Potri.014G172000 [exp] 902 / 0 AT5G48310 1350 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000766 pacid=23171866 polypeptide=Lus10000766 locus=Lus10000766.g ID=Lus10000766.BGIv1.0 annot-version=v1.0 ATGTTCACTGAAGGACTCGACAGCAATTCCCTTCGCTGGGTTACACAGAAGCAGAAGGAATCATCATCATCTACCATGTCTTCTCATTCAGTTCTCAGGC CACTCAATGATCCTATCTCCTCCCGGAAACACTCCAACCGCCTCCCGCCCTCCTCCAAGTTCAGGAGCGGCCACCTCCCCACCACTGCAATCCCGGTCTC CACAAGGTCCCTCTCAGACGCTACTGACTCCGATGATGATGAAGATGAAGTTTACGGGGGACGCGATTCCCTTGATTACATCCCTAATTCCAACTCTAGG TATCCCAATTATTCTTCCGCTTCTACTTACTCTGATGTTACTTCCTCCATGGAGACGGCTGTGGGGAGAAATAGCAATGCACCTTCCAGGCTGCCCAGGG GGAGTGGTTTTAGTGCTAGATTCGGCAGACCAAGCCCTGCTGGGAGGATTGCTTGTACCGAGGATGAGGACGATGAGGACTCCGATTCTGCTTCCAGCTC TGAGATCTCCACTACTCAAGCAGCAAATAGTAATGGTTTCCCTTTGCCTGGAAGTAGGCTGCGTGTCTCTGAAGATTATGCATCCAGTGCAGCTTCTCGG CCCAATGTGGACACCTTTGCTGCCAAGGTTGCTCATCCTCTAAATATACCGAATGAGAAATCTTCGTTTGATGGTGATGTACCAAGCGCACCTCCATTTT CTGGATCTCGTCCTGAGATTAAAGAAGCTGTTGAGGCAACATCAGAATTACTTAAGACCTCTCAGACTGCAGCTTCCAGTGGGTTCTCTAACACTGTATA TAATACTGGAAGCAAGAATTTGGATCATTCTGTAAGTGCAACAAGTGCTGAACAACCAATGTCCTCTGTTCCAAACCCAGCTCGACTTCCTACATTTCAT GCGAGCGCACTGGGGCCATGGCATGCTGTAATTGCATATGATGGATGTGTGCGGCTTTGCCTCCATGCTTGGGCTAGGGGTTGCATGGAAGCTCCTATGT TCTTGGAGAATGAGTGTGCTCTGCTCCGTGAGACATTTGGTGTACAGAATATGCTTTTGCAATCTGAGGAGGAATTATTATCAAAGCGCTCCTGTGAGCT TGGAGGCGAGGGAGCTGCTACGAAGCCTAAAAAGATCATTGGAAAGATGAAGGTGCAAGTTCGTAAAGTGAAAACAATGCTCGATCCTCAACCTGGGTGT AGTATGTCTGCGCTAGCTTTGAGGTCGCCGAAGTTGGAAATGGTTCAATATCGTTTCTCCAGGTTTCAATCATCAATCTATACTGGGTGGAAGGCTTTCA GAAGGATTCGTGTTGTACCTCGTATACCTGCAAATGGTTCTTTCAGACGTCAGAGCTTGGCTTATGTGCAAGCTAGCACACAATACATAAAGCAAGTGTC TGGACTTCTTAAATCTGGTGTAACAAGCCTCCGCAACAGCTCTTCATCATATGAAGTTGTGCAAGAAACATATTCTTGCTCATTAAGGTTGAAAAGTTCA GCAGAAGAAGATGCAATTAAGATGCAACCTGGATCTGGTGAAACTCATGTATTCTTTCCAGATAGCCTTGGGGATGATCTAATCATTGAAATCCAAGACT CTAAGGGGAAAAGTTTTGGTCGTGTCGTTGCTCAAGTTGCTACCATCTCTGAAGACTCGGTTGATAAGTTGCGGTGGTGGTCTATCTACAAAGAGCCCGA GCATGAACTTGTGGGCAAAGTGCAACTGTATATCAATTACTCAACAAGCTCAGAAGATGGTAATCCAAAATATGGCTCAGTGGCTGAAACAGTTGCGTAT GACCTTATTTTGGAAGTTGCCATGAAAGTTCAAAATTTTCAACAAAGAAACTTGGTGTTATATGGTTCATGGAAGTGGCTTCTCAATGAGTTTGCTACAT ATTATGGGGTTTCCGATGTGTACACCAAACTAAGACACCTTTCCTATGTGATGGATGTAGCTACACCAACAGCAGACTGCCTGACCTTGGTGTATGATTT ACTTACACCTGTAATCATGAAAGGCCATAGCAAGAGCGCTCTAAGCCATCAGGAGAACCGAATATTGGGAGAAATAAAGGATCAGATTGAACAGATTCTT TCTCTAGCTTTTGAGAACTACAAATCTCTTGATGAATCATTGCTCTCGGGTATCATGGATGTCTTCAAACCTGCGACAGCAGTTGCAGCTCCTGCATTGG AACCTGCTGTAAAGCTGTACACTCTTCTAAATGATGTATTGTTACCTGAGGCGCAAACTAAATTGACTCATTACTTCCAGGTTGCTGCAAAGAAGAGGTC TAGAAGGCATTTGAGTGAGACGGATGAATATGTAACCAATAACAGTGAAGGGATTTTAATGGATCCAATTGCTACCACTACTGCTTATCAGAAAATGACT TCCTTGTGTATGAACATAAAAAATGAAATTTACACTGATATGGAGATTCAGAGTCAACACATACTTCCCAGTTTTATAGACCTTCCAACCTTATCCGCGT CCATATACAGCACTGAGCTGTGCAGTAGATTGGGAGCTTTCTTAGTATCTTGTCCCCCATCTGGTCCTTCGCCTCACGTTGCAGAACTTGTTATTGCGAC TTCCGATTTTCAGAGGGAGATTGCCAGTTGGAGCATCAGTCCTGTGAAAGGAGGAGTTGATGCAAAGGAATTATTTCATTTGTATATCATGCTATGGATT CAAGACAAACGGCTTTCACTTCTTGAGTCATGCAAATTAGATAAGGTGAAATGGTCAGGTGTCCGGACACAACAATCTACCACTCCCTTTATTGATGAAA TGTATGAGAGGCTTAGGGAGACATTGGATGATTATGAAATCATTATCTGTCGCTGGCCTGAATACATCTTCGTGCTGGAAAATGCAATTGCTGATGTCGA GAAGGCAATTGTGGAAGCATTGGATAAGCAGTATGCGGATGTTCTTGCACCAATGAAAGAGAATTTGGCACCGAAGAAGTTTGGGTTTAACTATGTCAAG AAACTTACGAAACGTTCTGTGTGTGCTTACACAGTTCCTGATGAGCTTGGAATTCTGTTGAATTCAATGAAAAGAATGCTTGACCTGTTGCGTCCAAAGA TTGAAATTCGGTTCAAGTCTTGGGGCTCTTGCATACCTGATGGTGGGAACACAGCTCCTGGGGAACGTCTAAGTGAAGTGACTGTGATGCTGAGGACAAA GTTCCGAAGTTATCTGCAAGCTGTTGTAGAAAAACTCGCAGAAAATGCGAAGTTGCAAAATGCGACAAAATTAAAAAAGATACTTCAAGAATCAAAAGAA TCGGTTGGAGAAGCAGAGATAAGAGGGAGAATGGAATCTCTAAAAGAGCAGCTAAAGAATACAGTGAATCACCTGCATTCAGTGTTTGAGACTCATGTGT TCATTGCAATCTGTCGTGGATATTGGGACAGAATGGGGCAGGATGTTCTGAGCTTCATGGAGAACAGGAAAGAGAATAGGTCATGGTATAAAGGTTCTCG AGTTGCAGTTTCTGTGTTGGACGATACCTTTGCATCGCAAATGCAGCAGCTTCTTGGAAATGCTATACACGACAAGGATCTAGAGCCCCCCAGATCCATT ATGGAGGTCCGCTCGATGCTCTGTAAGGATGCACCCAATCATAAAGACAACGGCTATTATTACTGA
AA sequence Show only first row Show all	>Lus10000766 pacid=23171866 polypeptide=Lus10000766 locus=Lus10000766.g ID=Lus10000766.BGIv1.0 annot-version=v1.0 MFTEGLDSNSLRWVTQKQKESSSSTMSSHSVLRPLNDPISSRKHSNRLPPSSKFRSGHLPTTAIPVSTRSLSDATDSDDDEDEVYGGRDSLDYIPNSNSR YPNYSSASTYSDVTSSMETAVGRNSNAPSRLPRGSGFSARFGRPSPAGRIACTEDEDDEDSDSASSSEISTTQAANSNGFPLPGSRLRVSEDYASSAASR PNVDTFAAKVAHPLNIPNEKSSFDGDVPSAPPFSGSRPEIKEAVEATSELLKTSQTAASSGFSNTVYNTGSKNLDHSVSATSAEQPMSSVPNPARLPTFH ASALGPWHAVIAYDGCVRLCLHAWARGCMEAPMFLENECALLRETFGVQNMLLQSEEELLSKRSCELGGEGAATKPKKIIGKMKVQVRKVKTMLDPQPGC SMSALALRSPKLEMVQYRFSRFQSSIYTGWKAFRRIRVVPRIPANGSFRRQSLAYVQASTQYIKQVSGLLKSGVTSLRNSSSSYEVVQETYSCSLRLKSS AEEDAIKMQPGSGETHVFFPDSLGDDLIIEIQDSKGKSFGRVVAQVATISEDSVDKLRWWSIYKEPEHELVGKVQLYINYSTSSEDGNPKYGSVAETVAY DLILEVAMKVQNFQQRNLVLYGSWKWLLNEFATYYGVSDVYTKLRHLSYVMDVATPTADCLTLVYDLLTPVIMKGHSKSALSHQENRILGEIKDQIEQIL SLAFENYKSLDESLLSGIMDVFKPATAVAAPALEPAVKLYTLLNDVLLPEAQTKLTHYFQVAAKKRSRRHLSETDEYVTNNSEGILMDPIATTTAYQKMT SLCMNIKNEIYTDMEIQSQHILPSFIDLPTLSASIYSTELCSRLGAFLVSCPPSGPSPHVAELVIATSDFQREIASWSISPVKGGVDAKELFHLYIMLWI QDKRLSLLESCKLDKVKWSGVRTQQSTTPFIDEMYERLRETLDDYEIIICRWPEYIFVLENAIADVEKAIVEALDKQYADVLAPMKENLAPKKFGFNYVK KLTKRSVCAYTVPDELGILLNSMKRMLDLLRPKIEIRFKSWGSCIPDGGNTAPGERLSEVTVMLRTKFRSYLQAVVEKLAENAKLQNATKLKKILQESKE SVGEAEIRGRMESLKEQLKNTVNHLHSVFETHVFIAICRGYWDRMGQDVLSFMENRKENRSWYKGSRVAVSVLDDTFASQMQQLLGNAIHDKDLEPPRSI MEVRSMLCKDAPNHKDNGYYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24610			unknown protein		Lus10000766 [exp]	0	1
AT4G24610			unknown protein		Lus10015962 [exp]	1.0	0.9553
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10031648 [exp]	2.0	0.9545
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	4.0	0.9494
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	4.6	0.9537
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	5.7	0.9030
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	6.7	0.9462
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	6.7	0.9315
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	11.4	0.9307
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10030776 [exp]	11.8	0.9176
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	13.2	0.9337

Compare expression of checked genes

Lus10000766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.