Plant FIBer expression Database

Lus10000767 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24620 982 / 0 PGI1 phosphoglucose isomerase 1 (.1.2)
AT5G42740 135 / 1e-33 Sugar isomerase (SIS) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015959
[exp]
1105 / 0 AT4G24620 959 / 0.0 phosphoglucose isomerase 1 (.1.2)
Lus10007154
[exp]
132 / 2e-32 AT5G42740 953 / 0.0 Sugar isomerase (SIS) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G104000
[exp]
1009 / 0 AT4G24620 1006 / 0.0 phosphoglucose isomerase 1 (.1.2)
Potri.008G118900
[exp]
130 / 7e-32 AT5G42740 973 / 0.0 Sugar isomerase (SIS) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0067 SIS PF00342 PGI Phosphoglucose isomerase
Representative CDS sequence
>Lus10000767 pacid=23171871 polypeptide=Lus10000767 locus=Lus10000767.g ID=Lus10000767.BGIv1.0 annot-version=v1.0
ATGGCTTCCTTTTCCAGTCTCTGTTCTTCCTCTCCTTCTATCAAGCTCAAGCCAGCCGCTTCTCTTCCCAAAGCCATCCTTAATAACCCTGCAAACCCCA
CTTCTATCACCTTCCTTAATCGCTCCAAACCACCACCAGCTGCAGTTACTTACTCCGTCGCTCGTGAGGTCGCCGCCGATCTGTCCAGCACAGGTAACAA
TGCCCCTTTTAAAGGACTCGAAAAGGATCCTAAGGCGCTGTGGAGGAGGTACGTCGACTGGCTGTACCAACATAAAGAGCTCGGGCTTTACTTAGACGTT
AGCAGGATTGGGTTCACCGATGACTTCTACCGAGAAATGGAACCTCGCTTCCAGCAGGCTTTCGATTCGATGCGGGAGTTGGAGAAAGGATCGATTGCCA
ATCCGGACGAAGGGAGGATGGTCGGCCATTATTGGCTCAGAGATTCGGACCTAACTCCCACGCCCTTCTTGAAAACGCAGATTGAGACCACTCTTGATCA
AATTTGCTCCTTCGCTGATCAAGTCGTCAGCGGTAAGGTCGGTTTCCCCCCTGGTCATGTTCTTCGATTCTTCATTTCTCTGTTGCTCGCTCATGTTAAA
CCTCCGTCGTCTGGAGCTGCCCGTTTTACTCAGATACTCTCTGTTGGGATTGGCGGTTCAGCTCTTGGACCACAATTTGTTGCCGAGGCTTTGGCTCCTG
ATAACCCTCCTCTCAAAATCAGGTTTATCGATAACACGGACCCAGCTGGAATTGATCATCAGGTTGCTCAGCTTGGCTCTGAGTTGGCATCTACCCTTGT
GATCGTGACTTCTAAGAGTGGAGGCACGCCTGAAACTAGGAATGGTTTGCTGGAAGTGCAGAAGGCCTTCCGTGAAGCTGGTCTTGATTTTGCAAAACAG
GGTGTTGCGATCACGCAAGAAAATTCATTACTGGATAATACTGCTAGAATTGAAGGGTGGTTGGCAAGGTTCCCTATGTTCGACTGGGTTGGTGGAAGAA
CATCGGTAATGTCTGCAGTTGGCTTACTCCCAGCAGCACTTCAGGGGATTGACATTAGAGGAATGCTTGCTGGTGCAGCACTAATGGATGAGGCAACTAG
GGACACAGATCTGAGGAATAACCCGGCAGCTCTACTATCTTTATGCTGGTACTGGGCCACCGATGGGGTAGGATCCAAGGACATGGTTGTCCTTCCATAC
AAGGATAGTCTATTGCTATTTAGTCGGTATCTACAGCAGCTGGTCATGGAATCTCTTGGGAAGGAGTTTGACCTTAATGGAAATCGGGTTAATCAAGGGC
TTACAGTTTATGGAAATAAAGGGAGCACAGATCAACATGCATACATTCAACAACTGAGGGAGGGTGTGCACAATTTTTTTGCAACCTTCATTGAAGTCCT
GCGTGATAGACCCCCTGGTCATGATTGGGAACTTGAACCAGGAGTTACATGTGGTGACTATCTATTTGGAATGCTACAGGGAACTAGGTCAGCTCTATAT
GCTAATGATCGAGAGTCTGTAACTGTGACAGTAGAAGAGGTGACACCTAGGACAGTAGGGGCCCTTATTGCACTGTATGAGCGAGCGGTTGGATTGTACG
CCTTTCTTGTCAACATTAATGCCTACCATCAACCCGGTGTGGAAGCTGGGAAAAAGGCAGCAGGAGAAGTATTGGCTCTACAGAAGAGGGTATTGGCAGT
TCTGAACGAGGCAAGTTGTAAAGAGCCTGTGGAGCCATTGACGCTTGAGGAAGTAGCGGATCGTTGTCATGCCCCAGAGGATATTGAAATGATATACAAG
ATCATAGCACACATGGCAGCAAATGACAGAGCACTGATAGCAGAAGGCAGTTGCGGATCACCGCGCAGCATCAAAGTTTACCTTGGGGAGTGCAATGAGG
GAGCTCGCCGCAGCAAAACACAGACTACTAAGAAGGCGAAATAG
AA sequence
>Lus10000767 pacid=23171871 polypeptide=Lus10000767 locus=Lus10000767.g ID=Lus10000767.BGIv1.0 annot-version=v1.0
MASFSSLCSSSPSIKLKPAASLPKAILNNPANPTSITFLNRSKPPPAAVTYSVAREVAADLSSTGNNAPFKGLEKDPKALWRRYVDWLYQHKELGLYLDV
SRIGFTDDFYREMEPRFQQAFDSMRELEKGSIANPDEGRMVGHYWLRDSDLTPTPFLKTQIETTLDQICSFADQVVSGKVGFPPGHVLRFFISLLLAHVK
PPSSGAARFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQVAQLGSELASTLVIVTSKSGGTPETRNGLLEVQKAFREAGLDFAKQ
GVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSVMSAVGLLPAALQGIDIRGMLAGAALMDEATRDTDLRNNPAALLSLCWYWATDGVGSKDMVVLPY
KDSLLLFSRYLQQLVMESLGKEFDLNGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALY
ANDRESVTVTVEEVTPRTVGALIALYERAVGLYAFLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTLEEVADRCHAPEDIEMIYK
IIAHMAANDRALIAEGSCGSPRSIKVYLGECNEGARRSKTQTTKKAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24620 PGI1 phosphoglucose isomerase 1 (.1... Lus10000767
[exp]
0 1
AT4G32640 Sec23/Sec24 protein transport ... Lus10004122
[exp]
8.8 0.8579
AT2G21390 Coatomer, alpha subunit (.1) Lus10025780
[exp]
14.3 0.8494
AT4G31480 Coatomer, beta subunit (.1.2) Lus10031570
[exp]
18.0 0.8449
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Lus10001368
[exp]
21.4 0.8309
AT1G52360 Coatomer, beta' subunit (.1.2) Lus10011467
[exp]
24.5 0.8295
AT2G35110 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNAR... Lus10038353
[exp]
25.2 0.8298
AT5G51430 EYE EMBRYO YELLOW, conserved oligo... Lus10031155
[exp]
26.2 0.8208
AT1G60070 Adaptor protein complex AP-1, ... Lus10029177
[exp]
30.5 0.8280
AT3G60860 SEC7-like guanine nucleotide e... Lus10009300
[exp]
34.4 0.8236
AT2G39750 S-adenosyl-L-methionine-depend... Lus10040268
[exp]
36.9 0.8179

Lus10000767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.