Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21390 67 / 4e-13 EMB2170 embryo defective 2170 (.1) AT1G76980 64 / 6e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018947 [exp] 222 / 2e-72 AT1G21390 64 / 8e-12 embryo defective 2170 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075400 [exp] 60 / 3e-10 AT1G76980 141 / 2e-40 unknown protein Potri.005G185200 [exp] 55 / 9e-09 AT1G76980 134 / 1e-37 unknown protein Potri.005G064700 [exp] 49 / 1e-06 AT1G76980 70 / 7e-14 unknown protein Potri.007G104500 [exp] 48 / 3e-06 AT1G76980 70 / 6e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000771 pacid=23142593 polypeptide=Lus10000771 locus=Lus10000771.g ID=Lus10000771.BGIv1.0 annot-version=v1.0 ATGAACTTCCCCGAAATGTACGGCGAAAACGGCGGAGATAGCCGGCAGCCAAGGGCGGCAGAAGCGGAGGAAGTCATTCTTGTAATCGACGATGACGACG AGGAATGCTTCTCCACCGCAGCTTCCACCCCGCCTCCGCGGTGGCTTGGCCGGACAACGGCGGCGGAGGATGAGGAGGAGGATGATGGTGTAGCCGAAGA CTGGTGTCTTTCCCCTGCCTCCAGAGCTCTGGAGATAGCCAGAGGGCAGAGGGAGCTGATGGAGATGATCAGAACAATGCCGGAGGATTTCTACGAGCTT TCCCTCAAGGATTTGGTCGATCACCACGCTCAATTCTGTCGCAAATCGGACCCGGATCGGGTCGAGGAGCCATTACCGGAGAGAAATTCGAGTAGTTTGC CGGCGGCGCAACCGGTGAAGAAAGCTGACAATAATCCGCCGGCGGCGAAGATGAAAAGGAGTGGGAGCGTGAACTACGGATCGGGGTTTCTACTGAGGCT TCCGATTAATTACTTGAGGTCGAGGAACAAGAATAAGAAGATGGTCAAGAAGAAGAAGAAGGTAGGAGTCATGGTCGACGGTGGCAGTGGAAGAGTTTCC CCGAAGCCGGCGGTGGAGGCAGGGGAGAGTAAAAGAAGTAGTTCGGCGTTCAGCGGCGGAGGAAGCGAAAGTAGAAGCTCAAAGGGTAGTACTAGCCGTG GAAGCTGGAGAAGCAGCAGCAGAAATAATAGCATCAGGTTTGTTGTTGTTGGGGAAAAATTCTTGAACTGCCATTAA
AA sequence Show only first row Show all	>Lus10000771 pacid=23142593 polypeptide=Lus10000771 locus=Lus10000771.g ID=Lus10000771.BGIv1.0 annot-version=v1.0 MNFPEMYGENGGDSRQPRAAEAEEVILVIDDDDEECFSTAASTPPPRWLGRTTAAEDEEEDDGVAEDWCLSPASRALEIARGQRELMEMIRTMPEDFYEL SLKDLVDHHAQFCRKSDPDRVEEPLPERNSSSLPAAQPVKKADNNPPAAKMKRSGSVNYGSGFLLRLPINYLRSRNKNKKMVKKKKKVGVMVDGGSGRVS PKPAVEAGESKRSSSAFSGGGSESRSSKGSTSRGSWRSSSRNNSIRFVVVGEKFLNCH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10000771 [exp]	0	1
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013940 [exp]	9.4	0.7901
AT3G13290		VCR	varicose-related (.1)		Lus10039096 [exp]	10.0	0.7351
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	20.5	0.7583
AT1G31130			unknown protein		Lus10018940 [exp]	20.8	0.7632
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10028653 [exp]	26.8	0.7512
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	50.1	0.7600
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	59.6	0.7243
AT3G18670			Ankyrin repeat family protein ...		Lus10014030 [exp]	69.0	0.7510
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10025922 [exp]	73.3	0.7167
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10028053 [exp]	96.4	0.7333

Compare expression of checked genes

Lus10000771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.