Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21400 419 / 6e-146 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G09300 394 / 3e-137 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT5G34780 238 / 2e-76 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G59900 88 / 1e-19 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 84 / 3e-18 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 66 / 9e-12 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028648 [exp] 526 / 0 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10018945 [exp] 497 / 3e-168 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10020895 [exp] 401 / 5e-139 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10033480 [exp] 370 / 4e-128 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10013295 [exp] 87 / 7e-19 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 85 / 3e-18 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 83 / 1e-17 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 81 / 2e-17 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 66 / 8e-12 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185400 [exp] 405 / 2e-140 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G064000 [exp] 396 / 5e-137 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 383 / 1e-131 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Potri.008G192500 [exp] 89 / 9e-20 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.010G038400 [exp] 88 / 1e-19 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 65 / 1e-11 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Lus10000772 pacid=23142589 polypeptide=Lus10000772 locus=Lus10000772.g ID=Lus10000772.BGIv1.0 annot-version=v1.0 ATGGACACCATCTTCTACGAAGCGCAGCGACAAGGCCGGATATCCTTTTACCTTAGCTCATCCGGTGAGGAAGCCATCAGGGTTTCTTCGGCTGTTGCAC TCACCTCCGACGATGTCATCCTCCCCCAGTACCGAGAGCCGGGAGTTCTGCTATGGCGTGGCTTCACGCTTCAGGAATTCGCCAACCAATGCTTCGGGAA CAAGCACGGCTACGGGAAAGGAAGACAAATGCCTATCCATTACGGATCTAACAAGCTCAATTACTTCACCATTTCGTACCCTATAACATATATGAACTGT TACATAAATCCATCTCCTTTTGGAGATTTTCACGCTGGTTTGAACTTCACGGTGGTCATGGAGTCCCTTGTTATATTCGTTTCTAGGAACAATGGATGGG CCATCAGTACCAAAGTGTCAGAACAATTTCGAAGTGATGGGATTGTGGTCAAAGGACAAGGTTATGGGATGAGAAGCATTAGGGTTGATGGTAATGATGC TCTTTCTGTTTACTCAGCCATCCATTACGCTCGTCACATTGCGGTCACCGAAGGAAAACCTGTACTTGTCGAGGGCACCACTCCACCTCCGACGACTCAA ACCAAATACCGGCCATTGGACGAGATCGAGTACTGGAAAGTGGCTAGGAACCCAGTGACCAGATTCCGAAAATGGGTCAAAACCAATGGATGGTGGAGTG GCAACGAAGAATCCGAGGTCAGAGCCACAACTAGGAAACAACTCTTGCAAGCGATTCAGGCGGCGAAGAAGACCGAGAAGCCTTCCGTGGAAGAAATGTT CGCCGACGTTTATGATCGACCACCGTTGAACCTCTGCCAACAAGAAGAACAACTCAGAAAACCCATTAAGAAATACCCCATGGATTACCCTACTTATGTT CCTACCTATACTAATTAA
AA sequence Show only first row Show all	>Lus10000772 pacid=23142589 polypeptide=Lus10000772 locus=Lus10000772.g ID=Lus10000772.BGIv1.0 annot-version=v1.0 MDTIFYEAQRQGRISFYLSSSGEEAIRVSSAVALTSDDVILPQYREPGVLLWRGFTLQEFANQCFGNKHGYGKGRQMPIHYGSNKLNYFTISYPITYMNC YINPSPFGDFHAGLNFTVVMESLVIFVSRNNGWAISTKVSEQFRSDGIVVKGQGYGMRSIRVDGNDALSVYSAIHYARHIAVTEGKPVLVEGTTPPPTTQ TKYRPLDEIEYWKVARNPVTRFRKWVKTNGWWSGNEESEVRATTRKQLLQAIQAAKKTEKPSVEEMFADVYDRPPLNLCQQEEQLRKPIKKYPMDYPTYV PTYTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	0	1
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	2.0	0.9011
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	4.5	0.8907
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	5.9	0.8676
AT5G52250		EFO1, RUP1	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10005742 [exp]	6.9	0.8640
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	7.4	0.8702
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	8.1	0.8764
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	8.1	0.8681
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	8.7	0.8713
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10004819 [exp]	9.7	0.7361
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10004408 [exp]	10.2	0.7871

Compare expression of checked genes

Lus10000772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.