Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55200 74 / 2e-14 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 73 / 5e-14 Protein kinase superfamily protein (.1) AT3G13690 72 / 1e-13 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 61 / 4e-10 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G25220 59 / 1e-09 Protein kinase superfamily protein (.1.2) AT2G41970 57 / 6e-09 Protein kinase superfamily protein (.1) AT2G16750 57 / 7e-09 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G24080 57 / 7e-09 Protein kinase superfamily protein (.1) AT1G34300 57 / 8e-09 lectin protein kinase family protein (.1) AT5G35380 57 / 1e-08 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018944 [exp] 361 / 1e-121 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027964 [exp] 82 / 3e-18 AT5G35960 163 / 7e-48 Protein kinase family protein (.1) Lus10008566 [exp] 77 / 2e-15 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 72 / 1e-13 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 71 / 2e-13 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10002658 [exp] 66 / 5e-13 AT3G05140 106 / 1e-27 ROP binding protein kinases 2 (.1) Lus10009559 [exp] 69 / 2e-12 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 65 / 3e-11 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020385 [exp] 64 / 5e-11 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185500 [exp] 185 / 1e-53 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 72 / 8e-14 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 71 / 2e-13 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 71 / 2e-13 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G189850 [exp] 69 / 9e-13 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.002G130300 [exp] 67 / 4e-12 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 66 / 1e-11 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.013G149500 [exp] 62 / 3e-10 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G014636 [exp] 59 / 1e-09 AT4G32300 300 / 3e-95 S-domain-2 5 (.1) Potri.019G119200 [exp] 59 / 2e-09 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000773 pacid=23142586 polypeptide=Lus10000773 locus=Lus10000773.g ID=Lus10000773.BGIv1.0 annot-version=v1.0 ATGGTGATCATGGACTGCGGTTCTCATTCGTCGTCGGTGGTGGTGATTGCGTTTGATGTTACCAAGGAAAGGAGTGTCAAGGAGCTTAAGGCCACCATTG ATGGTGTCAGGAGTAAAAATGGCATTCTTTCCCCTGTCGATCGGCTTGTTTTCCTCGGTGTTCTGGATGAAGTGCCGCATCCTACGAGCATTCATGTGAC GGAAGATGAGGTTATCAAGAAGGTTGATATATACGTGACCAAGCTTTCGAAGAGTGCTGCAGTCTGCATCGACGAAAGAGTTTGTATTGAAGTTACAATG GCGGCCGGAACTCCACCGAAGCAGGTTGTATTGCAAGAAGTTGCAACCTCTAATGCGACATGGCTCGTACTAGACAGGCATCTTAAAAGGGAATTAAAGT TCTACCTTACACAGATTCCTTGCAAAGTGGCCTTAATTCAAGATGACTTGTCTGTCGAAATTGAGAGAGATCATACGAGGAATGTCACAGATGTTACAGA ACAAAAAACATTTTATGTCACGTCCAGACATGTTCCAATCTTTGATTATCAGGGCCATAGAAAAAGTAGGCAGTCTGTGTCTTGCTCAAGTTACCCGTTA TCTTGTGATTCAAGTAACGACTCCAAGTGGGCAATGGACCGTAATAACTCTCCAGCTATTGGCGCATCCACTAATCACGGTGGATCAGATAAGTCAAAAA ATACTCTTCAATGGCATCAGAGACAAGCTATTGCCATTGCAATTGGTAAGGGTCTGCGTTTTCTGCACGAAGAATGTCGAGGCAGCCCAATTGTACATCG AGATTTGCGCCCAAGCAATATGTTACTCACACATGATTTCGTTCCAAAGGCCGTATCATTGATTGAAGAGCTCGCTTTAAACAAGCTAATCAATCCTCAT CTAGGAGAGTTGTACGATACATATGAGCTCTACCAAATGGCTAAAGCAGCTTATCTCTGCGTACAACGGAACCCTGAAAATCGACCTTCAGCCTGA
AA sequence Show only first row Show all	>Lus10000773 pacid=23142586 polypeptide=Lus10000773 locus=Lus10000773.g ID=Lus10000773.BGIv1.0 annot-version=v1.0 MVIMDCGSHSSSVVVIAFDVTKERSVKELKATIDGVRSKNGILSPVDRLVFLGVLDEVPHPTSIHVTEDEVIKKVDIYVTKLSKSAAVCIDERVCIEVTM AAGTPPKQVVLQEVATSNATWLVLDRHLKRELKFYLTQIPCKVALIQDDLSVEIERDHTRNVTDVTEQKTFYVTSRHVPIFDYQGHRKSRQSVSCSSYPL SCDSSNDSKWAMDRNNSPAIGASTNHGGSDKSKNTLQWHQRQAIAIAIGKGLRFLHEECRGSPIVHRDLRPSNMLLTHDFVPKAVSLIEELALNKLINPH LGELYDTYELYQMAKAAYLCVQRNPENRPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	1.0	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036896 [exp]	1.4	1.0000
					Lus10002313 [exp]	4.0	1.0000
					Lus10029558 [exp]	4.4	1.0000
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	4.5	1.0000
					Lus10003831 [exp]	5.5	1.0000
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10005788 [exp]	5.9	1.0000
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10036470 [exp]	6.2	1.0000
					Lus10006010 [exp]	6.3	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	6.3	1.0000

Compare expression of checked genes

Lus10000773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.