Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77000 77 / 2e-17 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 77 / 2e-17 SKP2A F-box/RNI-like superfamily protein (.1) AT5G23340 39 / 0.0006 RNI-like superfamily protein (.1) AT5G27920 39 / 0.0009 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028645 [exp] 142 / 9e-42 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10018942 [exp] 137 / 5e-40 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10000777 [exp] 48 / 1e-07 AT1G77030 230 / 1e-71 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10013444 [exp] 43 / 2e-05 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 41 / 0.0001 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 39 / 0.0007 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185700 [exp] 83 / 2e-19 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.002G074700 [exp] 77 / 4e-17 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.013G013100 [exp] 41 / 9e-05 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 39 / 0.0007 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G022600 [exp] 38 / 0.001 AT5G27920 626 / 0.0 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000776 pacid=23142591 polypeptide=Lus10000776 locus=Lus10000776.g ID=Lus10000776.BGIv1.0 annot-version=v1.0 ATGGTGAGGAGTGAAGAATTGGATCGGTGCTTTGGAAAGCTGATGATGGTGGATGAAAAGGGTCAGAAGATTGGAGGAGTCGACATGGCTGAGTGGAAGG ATATTCCAATGGAGCTACTGTTGAGGAATTTGTCTGTTGGTAATGATCATCAGAGTATAATCATGGCGTCCGAGGTTTGTAGTGGATGGAGGGAGGCTGT TTGCTTGGCTGCTGATCACGCTTTGCAGGACGCAACTGCCGCGAATTGCCGCCTCGGGTGGTGCGCGAACGTTGGTGACAATGGGGTGTTGAGTCTGGCA TATGGATGTCCCAAACTACGAACACTCGACTTGTGTGGCTGTGTTTTGATAACAGACGATAGCGTGATTGCATTGGCCAACGGGTCTTCCAGGAGTAGCG ATTATGACATCTGGGTTTTGTGCTAA
AA sequence Show only first row Show all	>Lus10000776 pacid=23142591 polypeptide=Lus10000776 locus=Lus10000776.g ID=Lus10000776.BGIv1.0 annot-version=v1.0 MVRSEELDRCFGKLMMVDEKGQKIGGVDMAEWKDIPMELLLRNLSVGNDHQSIIMASEVCSGWREAVCLAADHALQDATAANCRLGWCANVGDNGVLSLA YGCPKLRTLDLCGCVLITDDSVIALANGSSRSSDYDIWVLC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Lus10000776 [exp]	0	1
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	2.4	0.8704
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	2.4	0.8799
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	2.8	0.8774
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10001137 [exp]	4.9	0.8518
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10024607 [exp]	6.9	0.8319
AT4G17360			Formyl transferase (.1)		Lus10007482 [exp]	9.3	0.8165
AT3G07760			Sterile alpha motif (SAM) doma...		Lus10001743 [exp]	12.6	0.8218
AT4G20330			Transcription initiation facto...		Lus10002233 [exp]	16.9	0.8694
AT5G10530			Concanavalin A-like lectin pro...		Lus10014649 [exp]	18.0	0.8257
AT1G02070			unknown protein		Lus10015899 [exp]	22.1	0.8204

Compare expression of checked genes

Lus10000776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.