Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11720 471 / 7e-160 Glycosyl hydrolases family 31 protein (.1) AT3G45940 337 / 2e-108 Glycosyl hydrolases family 31 protein (.1) AT1G68560 335 / 1e-107 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) AT3G23640 138 / 1e-35 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G63840 118 / 5e-29 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008067 [exp] 614 / 0 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10038408 [exp] 441 / 3e-148 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10035020 [exp] 339 / 9e-109 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10034315 [exp] 339 / 1e-108 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 336 / 2e-107 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 305 / 8e-96 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10020887 [exp] 114 / 1e-27 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10033490 [exp] 114 / 1e-27 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10035671 [exp] 89 / 5e-19 AT3G23640 1456 / 0.0 heteroglycan glucosidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154300 [exp] 496 / 1e-169 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 496 / 3e-169 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 493 / 2e-168 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 478 / 1e-162 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.008G120000 [exp] 329 / 7e-105 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.010G125800 [exp] 325 / 3e-103 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.001G129600 [exp] 130 / 4e-33 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.007G100000 [exp] 124 / 5e-31 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.005G069000 [exp] 115 / 6e-28 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10000779 pacid=23160151 polypeptide=Lus10000779 locus=Lus10000779.g ID=Lus10000779.BGIv1.0 annot-version=v1.0 ATGTTAACGCTGTGGAAGGTTGACGTTGCCAGCTCCATACTCGATGTCAATCTGTACGGCTCTCATCCGTTCTACATCGACGTCAGGTCGCCGTCAGAGG ACGGGAAAGTAGCGGCGGGAACCACTCACGGCGTGCTGCTGCTGAACAGAAACGGGATGGATGTCGTTTATACAGGGGACAGGATAACGTACAAGGCTAT AGGCGGGATTATAGACTTGTACATTTTCGCCGGGGAGTCGCCCGTGGATGTGATTGAGCAATACACTGAGCTCATTGGCCGCCCAGCACCGATGCCGTAT TGGTCGTTCGTAAGATTTCATCAATGCAAATACGGATACAAGAATATTTCGGAGGTTGAGGCGGTGGTTGCCGGATACGCCACAGCTAGGATCCCTTTGG AAGTCATGTGGACTGATATTGATTACATGGATGCTTACAAAGATTTTACTCTGGATCCTGTCAACTTCCCTGTTATGCAGATGAGGAATTTCGTCAACAG ACCACCAATTTGGCCAGAAGTTTGTGCCAATTCTGGATCCAGTCTGAACGACTCATACGGGACGTACATCCGTGGAATGGAAGCCGATATTTTCATCAAA CGAGACGGAGTGCCTTACTTGGGAGAAGTATGGCCAGGAAAAGTGTACTTCCCAGATTTTCTGAACCCAAACGCATCAGATTTCTGGAGGGAAGATATCC AGCGGTTTCTGTCCATTCTGCCCATTGATGGTCTATGGATAGACATGAATGAACTTTCTAATTTCATCACTTCCTCACCAACTTCCAACTCAACCCTTGA CCAACCACCTTACATGATCAACAATGGTGGTAATCACAGACCCATCATCAACAAAACCACCCCTGCAACTTGCCTGCACTTTGGTAATGTAACGGAGTAC AATGTCCATAACATGTACGGCCTGCTCCAAGCCAAAGCAACTAACGATGCCCTGATCAGAACGACAGGGAAACGCCCATTTGTACTGTCTAGATCAACCT TTGTTAGTCTGGAAAGTACGCGGCGCATTGGACTGGAGACATTGCTTCCACTTGGGAAGACTTGGCCAACACCATCCCTTCCATTTTGA
AA sequence Show only first row Show all	>Lus10000779 pacid=23160151 polypeptide=Lus10000779 locus=Lus10000779.g ID=Lus10000779.BGIv1.0 annot-version=v1.0 MLTLWKVDVASSILDVNLYGSHPFYIDVRSPSEDGKVAAGTTHGVLLLNRNGMDVVYTGDRITYKAIGGIIDLYIFAGESPVDVIEQYTELIGRPAPMPY WSFVRFHQCKYGYKNISEVEAVVAGYATARIPLEVMWTDIDYMDAYKDFTLDPVNFPVMQMRNFVNRPPIWPEVCANSGSSLNDSYGTYIRGMEADIFIK RDGVPYLGEVWPGKVYFPDFLNPNASDFWREDIQRFLSILPIDGLWIDMNELSNFITSSPTSNSTLDQPPYMINNGGNHRPIINKTTPATCLHFGNVTEY NVHNMYGLLQAKATNDALIRTTGKRPFVLSRSTFVSLESTRRIGLETLLPLGKTWPTPSLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11720			Glycosyl hydrolases family 31 ...		Lus10000779 [exp]	0	1
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10007760 [exp]	5.7	0.8074
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	17.1	0.8060
AT1G22060			unknown protein		Lus10037927 [exp]	21.8	0.7870
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10022601 [exp]	27.9	0.7649
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	29.4	0.7839
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	37.4	0.7370
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	44.4	0.7664
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	52.1	0.7579
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	62.3	0.7301
AT3G12020			P-loop containing nucleoside t...		Lus10016236 [exp]	65.2	0.7347

Compare expression of checked genes

Lus10000779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.