Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11720 141 / 8e-39 Glycosyl hydrolases family 31 protein (.1) AT3G45940 81 / 5e-18 Glycosyl hydrolases family 31 protein (.1) AT1G68560 77 / 1e-16 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008067 [exp] 281 / 5e-89 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10038408 [exp] 139 / 6e-38 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10035019 [exp] 99 / 4e-24 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 88 / 3e-20 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035020 [exp] 87 / 5e-20 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10034315 [exp] 87 / 7e-20 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442800 [exp] 155 / 8e-44 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 154 / 2e-43 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 146 / 1e-40 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 143 / 1e-39 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.008G120000 [exp] 92 / 1e-21 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.010G125800 [exp] 91 / 3e-21 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000780 pacid=23160153 polypeptide=Lus10000780 locus=Lus10000780.g ID=Lus10000780.BGIv1.0 annot-version=v1.0 ATGGAGAGGAGAAACAAGCCATCTTCTCATCATCTCCTCCATTTCCTCATTTTCTCATCTTCATTTCTTCTTCACATTCCCTTCTATTATTCTTCAGCTG CAGAACAAGTAGTAGGCTATGGAGTTACGAACTCCTTGACCGCCGATCTTAATCTTATCCAAACGTCCTCTCTTTACGGACCTGACATTCCCACTCTCAC CTTCTCCGCCTGCTTTGATACGGAGAAGCAACTGCGGATTCGAATCTCCGATCCCGAAACCGCCAGATGGGAGATCACGGGACAAATCATTAACCGCCGC CCGAGAGGCCACGGCGTCATGCTGCAGGAAGACACCGGAGTCTTCTCCCACCCGCGTTCCGACCTCGTCTTCGCCATCCAGAACACCGAGCCTTTCGGAT TTACCGTCTCCAGGAAGTCCGACGGCGATGTCTTGTTCGATTCCTCCGTGGAAGGCTCCGAATCGTCCACCTACCTAGTATTCAAGGACCAGTACATCCA GCTGTCTTCGAAGCTCCCTGGGAATCGATCTTCAATCTACGGCCTAGGGAGCATACCAAGCCCGATTTTAAGTTGA
AA sequence Show only first row Show all	>Lus10000780 pacid=23160153 polypeptide=Lus10000780 locus=Lus10000780.g ID=Lus10000780.BGIv1.0 annot-version=v1.0 MERRNKPSSHHLLHFLIFSSSFLLHIPFYYSSAAEQVVGYGVTNSLTADLNLIQTSSLYGPDIPTLTFSACFDTEKQLRIRISDPETARWEITGQIINRR PRGHGVMLQEDTGVFSHPRSDLVFAIQNTEPFGFTVSRKSDGDVLFDSSVEGSESSTYLVFKDQYIQLSSKLPGNRSSIYGLGSIPSPILS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11720			Glycosyl hydrolases family 31 ...		Lus10000780 [exp]	0	1
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	10.3	0.8537
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	21.6	0.8443
AT5G07740			actin binding (.1)		Lus10015724 [exp]	25.8	0.8378
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	27.7	0.8225
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	29.2	0.8245
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	30.5	0.8372
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	31.0	0.8314
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	32.9	0.8336
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10040449 [exp]	38.9	0.8222
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	40.1	0.8165

Compare expression of checked genes

Lus10000780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.