Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44550 144 / 1e-43 Uncharacterised protein family (UPF0497) (.1) AT4G20390 137 / 1e-40 Uncharacterised protein family (UPF0497) (.1) AT4G03540 57 / 2e-10 Uncharacterised protein family (UPF0497) (.1) AT1G03700 56 / 5e-10 Uncharacterised protein family (UPF0497) (.1) AT4G15630 56 / 1e-09 Uncharacterised protein family (UPF0497) (.1) AT1G14160 56 / 2e-09 Uncharacterised protein family (UPF0497) (.1) AT5G15290 56 / 2e-09 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT4G15620 55 / 3e-09 Uncharacterised protein family (UPF0497) (.1) AT3G06390 52 / 2e-08 Uncharacterised protein family (UPF0497) (.1) AT4G15610 47 / 2e-06 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008067 [exp] 251 / 2e-77 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10033971 [exp] 74 / 1e-16 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 74 / 4e-16 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10011179 [exp] 71 / 3e-15 AT1G03700 155 / 7e-49 Uncharacterised protein family (UPF0497) (.1) Lus10015443 [exp] 63 / 4e-12 AT1G03700 127 / 2e-37 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 62 / 1e-11 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 56 / 1e-09 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 54 / 4e-09 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10036770 [exp] 45 / 4e-06 AT1G14160 119 / 2e-34 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442300 [exp] 171 / 6e-54 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1) Potri.011G154900 [exp] 165 / 2e-51 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 75 / 6e-17 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 75 / 7e-17 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 59 / 7e-11 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 57 / 4e-10 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.008G205100 [exp] 55 / 2e-09 AT4G15630 144 / 1e-43 Uncharacterised protein family (UPF0497) (.1) Potri.008G205000 [exp] 54 / 7e-09 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 48 / 7e-07 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 44 / 2e-05 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10000781 pacid=23160149 polypeptide=Lus10000781 locus=Lus10000781.g ID=Lus10000781.BGIv1.0 annot-version=v1.0 ATGGCCGAAGTAGATGCTCTGAGGTCCGACGAGCACTCGAGTTCCATCATCATCAGCAGCAGCAGCAGCAGACGGAATCTGAAATGGGTACTAGTGCTAA GGGTGGCGGCATTATTGGCGACAGCAGCTGCAACCATTGTGATGTCAGTGAACAAAGAAACTAAAACCTTTGTAGTTGGTAGTGTTGGGACAACCCCTAT TACTGCTTCTGTCACTGCTAAGTTCTCACATACCCCTGCCAATGTGTTATTTGTGATAGCAAATGCAATGGCTAGCAACCATAACTTGATGATGATTGGT TTGGACTTGCTGGAGCTTGATTACAAGGGTCTCAAACTCCCCTTAGTACCAGTTCTTGACATGTTAAACGCGGTGCTGCTATCAGCGGGAGTGAATTCGG CAGGGTTCATGGCGCAGCTTGCAAAGAATGGTAACTCACACGCCAGATGGAATGAAATATGTGACAACTTTGAAGGATACTGCAATCGTGGTGGGATAGC CATTCTTGCTTCCTACGTTGGGATGCTTATAACGTTAGTAATAACGGTCATCTCCATCGTTAAGCTTCTAAAGCACAAGCCAAAACATATGTCGTCTGCC CCTGTTGAGGTTCAAATCCCGTAA
AA sequence Show only first row Show all	>Lus10000781 pacid=23160149 polypeptide=Lus10000781 locus=Lus10000781.g ID=Lus10000781.BGIv1.0 annot-version=v1.0 MAEVDALRSDEHSSSIIISSSSSRRNLKWVLVLRVAALLATAAATIVMSVNKETKTFVVGSVGTTPITASVTAKFSHTPANVLFVIANAMASNHNLMMIG LDLLELDYKGLKLPLVPVLDMLNAVLLSAGVNSAGFMAQLAKNGNSHARWNEICDNFEGYCNRGGIAILASYVGMLITLVITVISIVKLLKHKPKHMSSA PVEVQIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	0	1
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	1.7	0.9670
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	2.0	0.9634
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	3.9	0.9601
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	4.0	0.9218
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	5.0	0.9572
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	5.3	0.9576
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10027227 [exp]	7.0	0.9420
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	7.1	0.8841
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	9.2	0.9251
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	9.8	0.9414

Compare expression of checked genes

Lus10000781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.