Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20380 160 / 4e-51 LSD1 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) AT1G32540 115 / 3e-33 LOL1 lsd one like 1 (.1.2.3) AT4G21610 94 / 2e-25 LOL2 lsd one like 2 (.1) AT4G25110 39 / 0.0003 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008066 [exp] 259 / 1e-89 AT4G20380 212 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10023392 [exp] 189 / 1e-62 AT4G20380 210 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10038409 [exp] 155 / 3e-47 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3) Lus10035361 [exp] 116 / 4e-34 AT1G32540 233 / 5e-80 lsd one like 1 (.1.2.3) Lus10030969 [exp] 116 / 5e-34 AT1G32540 236 / 5e-81 lsd one like 1 (.1.2.3) Lus10040081 [exp] 117 / 1e-33 AT1G32540 227 / 3e-76 lsd one like 1 (.1.2.3) Lus10020766 [exp] 85 / 1e-21 AT4G21610 133 / 3e-40 lsd one like 2 (.1) Lus10028157 [exp] 42 / 5e-05 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 40 / 0.0003 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442400 [exp] 194 / 1e-64 AT4G20380 195 / 3e-64 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.011G154800 [exp] 186 / 2e-61 AT4G20380 205 / 5e-68 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.003G090300 [exp] 119 / 3e-35 AT1G32540 194 / 1e-64 lsd one like 1 (.1.2.3) Potri.001G143900 [exp] 115 / 1e-33 AT1G32540 189 / 9e-63 lsd one like 1 (.1.2.3) Potri.004G043100 [exp] 82 / 1e-20 AT4G21610 131 / 7e-40 lsd one like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [flax] [poplar] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10000782 pacid=23160152 polypeptide=Lus10000782 locus=Lus10000782.g ID=Lus10000782.BGIv1.0 annot-version=v1.0 ATGGACATGTCCCAATTTATATGTGGAGGTTGCAGGACATTGCTAATGTATACTCGTGGAACAACAAACGTGAGATGCTCCTGCTGTCACACTGTGAACC TTGCACCAGTATCTAATCAGGTGGCTCACATAAACTGTGGGAACTGCCGGACAACGCTTATGTATCCATATGGAGCTCCATCCGTGAAGTGTGCAGTCTG TCACTTTGTTACTAATGTCACTATTTCAAATGTGAGGGTTCAACAAAGACCAAACGATCAAGGTGCTATGGTGCCATCTACGTCCCCAGCAATGCCGCAA TCACAAACACAGACAGTTGTCGTTGAAAACCCAATGTCGGTGGATGAGAGTGGCAAATTGGTGAGCAATGTGGTTGTTGGAGTCACTACGACAGACAGAA AATAA
AA sequence Show only first row Show all	>Lus10000782 pacid=23160152 polypeptide=Lus10000782 locus=Lus10000782.g ID=Lus10000782.BGIv1.0 annot-version=v1.0 MDMSQFICGGCRTLLMYTRGTTNVRCSCCHTVNLAPVSNQVAHINCGNCRTTLMYPYGAPSVKCAVCHFVTNVTISNVRVQQRPNDQGAMVPSTSPAMPQ SQTQTVVVENPMSVDESGKLVSNVVVGVTTTDRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10000782 [exp]	0	1
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10032890 [exp]	2.0	0.8683
					Lus10033126 [exp]	2.4	0.8591
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	3.3	0.8708
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	3.7	0.8091
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004833 [exp]	7.5	0.7864
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	9.7	0.8004
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	13.2	0.8167
AT3G26740		CCL	CCR-like (.1)		Lus10041522 [exp]	14.8	0.8183
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	15.9	0.8033
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	17.0	0.8056

Compare expression of checked genes

Lus10000782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.