Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55220 336 / 6e-109 trigger factor type chaperone family protein (.1) AT4G26780 243 / 6e-76 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 236 / 2e-73 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) AT5G17710 61 / 1e-09 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT1G36390 47 / 2e-05 Co-chaperone GrpE family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010250 [exp] 454 / 5e-154 AT5G55220 602 / 0.0 trigger factor type chaperone family protein (.1) Lus10010247 [exp] 395 / 4e-136 AT5G55200 270 / 7e-91 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) Lus10032565 [exp] 325 / 2e-107 AT4G26780 299 / 1e-100 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10043180 [exp] 291 / 4e-94 AT4G26780 281 / 2e-93 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10029654 [exp] 54 / 1e-07 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10042696 [exp] 53 / 4e-07 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 52 / 8e-07 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10028034 [exp] 50 / 3e-06 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10003741 [exp] 48 / 1e-05 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065900 [exp] 381 / 9e-127 AT5G55220 664 / 0.0 trigger factor type chaperone family protein (.1) Potri.015G065800 [exp] 257 / 4e-81 AT4G26780 291 / 3e-97 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.011G089000 [exp] 243 / 9e-76 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.013G067900 [exp] 56 / 4e-08 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.002G090000 [exp] 54 / 1e-07 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 53 / 2e-07 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0487 [flax] [poplar] PF01025 [flax] [poplar] GrpE GrpE CL0487 [flax] [poplar] PF05697 [flax] [poplar] Trigger_N Bacterial trigger factor protein (TF)
Representative CDS sequence Show only first row Show all	>Lus10000783 pacid=23180902 polypeptide=Lus10000783 locus=Lus10000783.g ID=Lus10000783.BGIv1.0 annot-version=v1.0 ATGTTGTTATCCAGGGTTTTGTCGCGTGTCTCTAGGAACGTCGCCGGACGCCGCTCCCTCCTTCTCTCCTCTACCTCGCCAAAGCAGCAGCAGCAGCAGC AGCTGATTCCTGGAGTACAGCCTGTTACTAATCAGGGACTTGAGCATGTGTCCGGATTGCATCAGTCACCCTCTAATTCTTTCTACTTTCAAAACTTTGG ATTCGCATCATCTGCATCGCCTGAGCCAACAGAGGATGAAAAGGCTGCTACTGAAAAAATTAACGGAAATGAAGGTGCTCATTCAGAAGATTCACCTTCT AAAGAATGCAAGGAGTCGTCAGAACCGGAGGATGATATTGATCTTTCAAGGGATGACTTGTTGAAACTTGTGGTTGAGAAGGATGATATGCTGAAGGCAA GGCAGGAAGAGTCCGAGAGGATGAAAGATAAATTTCTTCGTGCCTTAGCCGAAAATGAAAATGTGATGGAAAGAACTAAACGTGAAGCAGAGAACTCTAG AAAATATGCCATTCAGAATTTTGCAAAAGGTCTGTTGGATGTTGCTGACAATTTGGCGAGGGCCTCTTCAGTTTTCAAAGAGAGTTTTGCTAAGATTGAT ACATCTAAGGACAGCGCAGGAGTGGTGCCACTTGTCAAATCACTATCGGAAGGAGTTGATATGACCGAGAAACAACTCGGTGAGGTTTTTAAGAAATTTG GTGTCGAAAAGTTTGATCCAACCGGCGAGCCTTTTAATCCACATAGACACAATGCTGTCTTTCAAGTACCTGATGCTTCTAAGCCTCCAGGCACAGTTGC TCAAGTTCTGAAGGCAGGATACATGCTCCATGAGCGGGTGGTTCGGCCAGCAGAAGTTGGTGTTACTGTGAGGTTGGGAGTGGAAGTTCCGTCGGCAGTC TGTGAGGATTGCTACAAGCGAGTCATCAAGGAGTTCTCGAAGAAAGCCAAGGTTCCAGGTTTTCGTCCTGGAAAAAGCCTTCCGGAGAATATTCTTATCA ATTACGTTGGCAGGCAAAGTTTTCAGAAGGCTGTTGTTGAGTCTATCTTGCAGAGGACTCTCCCTCACGCGTTGACTTCGGTGAATGAAAGGGCTTTGAA AGACTCAGTCCGCATAGCTACCAGTTTCTCTGAGATAGAGAAGACGTATTCGTCTCTTAAAACCCTCAGGTATGATATCCTTGTTGATGTAGCCCCAGAA CTCAAATGGAACCCGGAGGATGGATACAAAAATTTGAAGGTTGTTGTGGAAATAGACAGTGATATAGATGCGCAGACAGCTTCCGAACAGGAATTTAGAC GTCGTCACAAGTCCCTTGGTTCCATGAGAATATTAACTGACAGAGGACTACAGGTGGGTGATGTTGTTGTGTTTGATATATCAGCAAAAAGACTTGACAG TGAAGAATCTGACAATATTTTAGATGCAGAGAGTAAAGGATTCAATTTTGATACGGAGGAAGGTAACAGTGTTATCCCAGGCTTCCTTAATTCAATAATT GGTATTCGACAAGGTGAAGTCAAGTCTTTCCCACTTACGTTTCCTGAAACATGGAGACAAGAAAATCTACGTGGCCTTCATGCTCAATTTTCTGTAAGTT CTCACTGCATGCCCAAACTAGTAGAATACATCAAGATATAA
AA sequence Show only first row Show all	>Lus10000783 pacid=23180902 polypeptide=Lus10000783 locus=Lus10000783.g ID=Lus10000783.BGIv1.0 annot-version=v1.0 MLLSRVLSRVSRNVAGRRSLLLSSTSPKQQQQQQLIPGVQPVTNQGLEHVSGLHQSPSNSFYFQNFGFASSASPEPTEDEKAATEKINGNEGAHSEDSPS KECKESSEPEDDIDLSRDDLLKLVVEKDDMLKARQEESERMKDKFLRALAENENVMERTKREAENSRKYAIQNFAKGLLDVADNLARASSVFKESFAKID TSKDSAGVVPLVKSLSEGVDMTEKQLGEVFKKFGVEKFDPTGEPFNPHRHNAVFQVPDASKPPGTVAQVLKAGYMLHERVVRPAEVGVTVRLGVEVPSAV CEDCYKRVIKEFSKKAKVPGFRPGKSLPENILINYVGRQSFQKAVVESILQRTLPHALTSVNERALKDSVRIATSFSEIEKTYSSLKTLRYDILVDVAPE LKWNPEDGYKNLKVVVEIDSDIDAQTASEQEFRRRHKSLGSMRILTDRGLQVGDVVVFDISAKRLDSEESDNILDAESKGFNFDTEEGNSVIPGFLNSII GIRQGEVKSFPLTFPETWRQENLRGLHAQFSVSSHCMPKLVEYIKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55220			trigger factor type chaperone ...		Lus10000783 [exp]	0	1
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10002522 [exp]	1.0	0.8739
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	2.0	0.8719
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	4.7	0.8343
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	6.0	0.8682
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	11.7	0.8686
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	12.0	0.8008
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	13.1	0.7886
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	13.2	0.8512
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	16.4	0.8630
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	16.7	0.8471

Compare expression of checked genes

Lus10000783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.