Lus10000785 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008070 178 / 4e-57 ND /
Lus10029474 115 / 3e-33 ND /
Lus10011959 115 / 6e-31 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
Lus10011636 102 / 1e-27 ND /
Lus10003721 82 / 2e-20 ND /
Lus10019570 74 / 6e-16 AT1G05785 187 / 2e-59 Got1/Sft2-like vescicle transport protein family (.1.2)
Lus10010034 65 / 2e-13 ND /
Lus10011650 43 / 2e-05 ND /
Poplar homologues

No hit found

PFAM info
Representative CDS sequence
>Lus10000785 pacid=23180901 polypeptide=Lus10000785 locus=Lus10000785.g ID=Lus10000785.BGIv1.0 annot-version=v1.0
ATGCGAGGCACAACATACCGTCTTGTCTACATCTTACTATCATATTACGCCTTCGCTACCCGTCTAGGTTCTACTAAGCAGTCGTTTCATTTCCACCCAA
CAAATAGGGTCGTCTTCGGGCTGAATAGCTGGGTTGATTGGCCAAGAACCCTCAAAGAGAACATGACTCCTTTCCATCACTACCAGCTCATCCTCCCAGT
AATTAGTCACTTGTTCTATGTGAAAGTTACTAAGCCAACTACCCAAACGGGTGACTGTTTCAGCATTGGTCTCCCATCTGGCAACACAAGCTGTTCATTG
TGTCATGTGAAATACTACCCCTATGGTCCCGTTCCTTACCATGAACGCCAACAGGAATCGGGCTTCAGCTGGGAAGGAGTCGTAGCAGTGCGGCGGAATG
AAGAAGATGTTCATGCCCATGTAGCACAGATGCCAATCAAGATGTTGGATCGGGGTGCCCACTTGCCCGTTTTTTAG
AA sequence
>Lus10000785 pacid=23180901 polypeptide=Lus10000785 locus=Lus10000785.g ID=Lus10000785.BGIv1.0 annot-version=v1.0
MRGTTYRLVYILLSYYAFATRLGSTKQSFHFHPTNRVVFGLNSWVDWPRTLKENMTPFHHYQLILPVISHLFYVKVTKPTTQTGDCFSIGLPSGNTSCSL
CHVKYYPYGPVPYHERQQESGFSWEGVVAVRRNEEDVHAHVAQMPIKMLDRGAHLPVF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000785 0 1

Lus10000785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.