Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45320 504 / 2e-179 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030280 [exp] 682 / 0 AT2G45320 449 / 2e-157 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068500 [exp] 557 / 0 AT2G45320 522 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000786 pacid=23168862 polypeptide=Lus10000786 locus=Lus10000786.g ID=Lus10000786.BGIv1.0 annot-version=v1.0 ATGAGAGTATGCAGTGGGTGGCGCCGTTTCCTGGTTTTCCTTCCTCTTGTGTTCATCCTTTCTCATCTCAACTATGTTCTGAAGCTGCACCAAAGAGTAA TTGAGGATCATCAGCCCAAGAAACATAACAAGAAATTCGATCATCTGGTTCTCGGTCCTGCAGCTGGTCAAGGCTTGCCAAATCGTCTGCAATGTGAAGG CTCTCGAGCTCTCAACAAAACACACGCACAAACCACATCCCTTGCTTCGAATGCTGGCGATGGAGTTTCACTTGTCACTGTTTTCACCATCTATAATGAG AGTAGATCGTCTGATTTGGTGACTGTTGGAAATGCTTCGTATAGTAAGACTGAGCGGTCAATGGTCGTTTTGAACGTCTTCATTAACTTCATTCAGGCGG CAATGCCACGGAGCAATGTTGTGATTCTAACCGATCCAGCATCCGATCTCTCAGTTCATCGAAACCACGTCACTGTATATCCGATTCAGGGCGAATATTC ACGCGACAAGCTGATGCTTCAAAGAATCAGGTCATACATTACTTTCCTAGACATCAAACTGAAGTATCTCCATAGCAACGGACGAGTCAACCATTACATC TTCACCGATTCAGATATCGCGGTGGTTGATGATCTAGGACACATATTCCGCGACTATCCGAATTTTCATCTCGCTCTGACCTTCCGTAACAACAAGGGCC AGCCTCTAAATTCCGGGCTCATAGCCGTAAGAGGAACACAAGACGGACTCTCGAGGTCGAAGTTGTTTCTCGAACGGGTACTGCAAGTATATAGTTCGAA GTACATGGCTTCTTCTAGAATGCTTGGAGACCAGTTAGCTCTTGCATGGGTCGTCAGATCGAGCCGTGATTTCGATTTGAGGAGATTTGGTAAACCGCAA GCTTTCGAAGCTGAGATCGGCGAGGCATCAGTGCTATTCCTACCGTGTGCTTTGTATAACTGGACTCCACCCGAAGGTGCAGGGCAGTTTCATGGCATGC CTCTGGATGTTAAGGTGGTTCATTTCAAAGGATCGAGGAAGAGACTGATGCTGGAGGCATGGAACAAGTTTAATTCCTCTAGTGATATATCTGACATGCT GTGTCTCATTCTAATGAGCGGGAGAACTAAGTATGACTTTTGA
AA sequence Show only first row Show all	>Lus10000786 pacid=23168862 polypeptide=Lus10000786 locus=Lus10000786.g ID=Lus10000786.BGIv1.0 annot-version=v1.0 MRVCSGWRRFLVFLPLVFILSHLNYVLKLHQRVIEDHQPKKHNKKFDHLVLGPAAGQGLPNRLQCEGSRALNKTHAQTTSLASNAGDGVSLVTVFTIYNE SRSSDLVTVGNASYSKTERSMVVLNVFINFIQAAMPRSNVVILTDPASDLSVHRNHVTVYPIQGEYSRDKLMLQRIRSYITFLDIKLKYLHSNGRVNHYI FTDSDIAVVDDLGHIFRDYPNFHLALTFRNNKGQPLNSGLIAVRGTQDGLSRSKLFLERVLQVYSSKYMASSRMLGDQLALAWVVRSSRDFDLRRFGKPQ AFEAEIGEASVLFLPCALYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLEAWNKFNSSSDISDMLCLILMSGRTKYDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45320			unknown protein		Lus10000786 [exp]	0	1
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	1.0	0.9357
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	1.7	0.9193
AT3G62140			unknown protein		Lus10038035 [exp]	3.2	0.9207
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	6.6	0.9180
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	7.5	0.9079
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	8.7	0.9171
AT5G54850			unknown protein		Lus10043054 [exp]	9.2	0.8852
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	9.5	0.9159
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Lus10003725 [exp]	13.9	0.8973
AT1G32310			unknown protein		Lus10030955 [exp]	15.6	0.9050

Compare expression of checked genes

Lus10000786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.