Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00110 689 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT1G02000 684 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT2G45310 649 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 587 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT3G23820 556 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G30440 556 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G23920 101 / 1e-23 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 93 / 9e-21 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT4G10960 92 / 2e-20 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT3G14790 91 / 2e-19 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030281 [exp] 819 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 747 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 716 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10008893 [exp] 559 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10032391 [exp] 558 / 0 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10022552 [exp] 547 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10015496 [exp] 547 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10016640 [exp] 546 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10031127 [exp] 523 / 0 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068400 [exp] 703 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 691 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 574 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 573 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 570 / 0 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.012G128200 [exp] 552 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.006G178500 [exp] 538 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.018G100400 [exp] 536 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 197 / 6e-62 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 100 / 4e-23 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10000787 pacid=23168855 polypeptide=Lus10000787 locus=Lus10000787.g ID=Lus10000787.BGIv1.0 annot-version=v1.0 ATGTCGCATCTGGATCACAACGCGCCATCCACCCCCGGCAAATTCAAGATGGAGAAATCCTCCTACCCTTACCATGGCGGCAGCAGGTTGATGAGGTGGC ATACGTCATTGGCTAAGCTAACATTCTGGTCCTTCCTATTCACCTCGTCGTCTCCTGCGATTCCCAATCGCGCAGCCGACGTCCACTCCGATCCTTCCCG CCGCTCCCTCCGCACATCTTCTTGGGGCGGAGCCGCCTGGGAGAAGAAGGTCCGAACCTCCGCCAGAATCCGCTCTAGAAACGGATTCTCCGTCCTCGTC ACCGGCGCCGCCGGCTTCGTCGGAACTCACGTCTCGTCGGCGTTGAAGCGGCGTGGCGACGGCGTTCTCGGCGTCGACAATTTCAACGACTACTACGATC CTTCTCTGAAGCGCGCCAGACAGGCGCTTCTGGAAAGATCCGGTGTGTTCATCGTCGAAGGAGACATAAACGACGCCGCATTGCTCAAGAAGCTCTTCGA AGTTGTCCCCTTCACTCACGTCATGCACTTAGCCGCCCAGGCAGGGGTTAGGTACGCTATGCAGAACCCTAGCTCTTACGTACACAGCAACATTGCTGGA TTTGTTAACTTGTTAGAAGTTTGCAAAGATGCCACTCCACAGCCTGCAATTGTATGGGCATCTTCAAGCTCTGTCTATGGATTAAACACCAAAGTTCCTT TTTCTGAAAAGGATAGAACTGATCAGCCTGCTAGCTTGTATGCTGCAACTAAGAAAGCCGGAGAAGAAATTGCTCATACATATAATCATATCTATGGCCT TTCCTTAACCGGATTGAGATTCTTTACTGTGTATGGACCGTGGGGGAGGCCGGATATGGCGTATTTCTTCTTCACAAAGGATATATTGAATCGTAAGAGC ATACCGATCTTTGAAGGTGAGAATCATGGCACGGTTGCTAGGGATTTCACCTACATTGATGATATTGTGAAAGGTTGCTTAGGTGCTTTGGATACTGCTC GGAAGAGTACTGGTAGTGGAGGGAAGAAGAAGGGTCCCGCTCAGTTGAGAGTTTTCAACTTGGGGAACACTTCTCCGGTACCGGTTACGAATCTAGTTAC GATTCTGGAGAGGCTTTTGAAAGTTAAGGCCAAAAGGAGGGTGATGAAGTTGCCTAGGAATGGTGATGTTCAGTTCACTCATGCCAATATTAGTTTGGCT CACAGGGAGCTTGGGTACAAACCCACCACGGATTTGCAAACCGGGTTGAAGAAGTTTGTGAGATGGTACCTTAGTTACTATTCTGCTGCAGGGAAGAAGG GTGACACGCGATGA
AA sequence Show only first row Show all	>Lus10000787 pacid=23168855 polypeptide=Lus10000787 locus=Lus10000787.g ID=Lus10000787.BGIv1.0 annot-version=v1.0 MSHLDHNAPSTPGKFKMEKSSYPYHGGSRLMRWHTSLAKLTFWSFLFTSSSPAIPNRAADVHSDPSRRSLRTSSWGGAAWEKKVRTSARIRSRNGFSVLV TGAAGFVGTHVSSALKRRGDGVLGVDNFNDYYDPSLKRARQALLERSGVFIVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMQNPSSYVHSNIAG FVNLLEVCKDATPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILNRKS IPIFEGENHGTVARDFTYIDDIVKGCLGALDTARKSTGSGGKKKGPAQLRVFNLGNTSPVPVTNLVTILERLLKVKAKRRVMKLPRNGDVQFTHANISLA HRELGYKPTTDLQTGLKKFVRWYLSYYSAAGKKGDTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10000787 [exp]	0	1
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	2.0	0.9407
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	2.4	0.9341
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10025946 [exp]	2.8	0.9295
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10030281 [exp]	3.2	0.9291
AT2G01970			Endomembrane protein 70 protei...		Lus10042286 [exp]	7.3	0.9304
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10037588 [exp]	8.4	0.9138
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	8.5	0.9291
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	9.4	0.9185
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	10.4	0.9174
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10012348 [exp]	10.7	0.9082

Compare expression of checked genes

Lus10000787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.