Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45300 778 / 0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1) AT1G48860 771 / 0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030282 [exp] 863 / 0 AT2G45300 757 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146400 [exp] 802 / 0 AT2G45300 790 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1) Potri.014G068300 [exp] 664 / 0 AT2G45300 642 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0290 [flax] [poplar] EPT_RTPC PF00275 [flax] [poplar] EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Representative CDS sequence Show only first row Show all	>Lus10000788 pacid=23168861 polypeptide=Lus10000788 locus=Lus10000788.g ID=Lus10000788.BGIv1.0 annot-version=v1.0 ATGGCGCAAGTTACCAAAATCTGCGGCGGAGCTAATGCAGTTGCTCTCCCCGCTACATTTGGAACTCGAAGAACCAAATCCATATCCTCCTCGGTCTCAT TTAGATCTTCAACATCTCCTCCGAGTTTGAAGCAACGTCGACTATTGGGCAATGTAGCCGCCGCCGCCGCCGCCGCTCCTCTTCGTGTTTCGGCATCGCT CACCACGGCAGCTGAGAAGGCTTCCACGGTGCCGGAGGAGATCGTGCTGCAGCCTATTAAAGACATATCGGGGATTGTGACTCTGCCTGGTTCTAAATCT CTCTCGAATCGGATTCTCCTTCTCGCCGCACTCTCTGAGGGTAAAACTGTGGTGGACAATTTGTTGAACAGTGATGATGTTCACTACATGCTTGGAGCAT TGAAAACACTCGGACTAAATGTGGAGCATAGCAGTGAGCAGAAGCGCGCCATTGTTGAAGGTCGTGGTGGTGTGTTTCCGGTCGGTAAACTGGGGAAGAA CGATATCGAACTTTTCCTTGGAAATGCTGGAACAGCTATGCGTCCGCTGACAGCTGCTGTAACAGCCGCTGGAGGCAACTCAAGCTACATACTCGACGGG GTACCACGAATGAGAGAGAGACCGATTGGAGATTTAGTTGTTGGTCTGAAGCAGCTTGGTGCTGATGTCTCTTGTTCTTCTACTAGCTGCCCTCCTGTCC ACGTAAATGCAAAGGGAGGCCTACCAGGCGGAAAGGTTAAGCTTTCTGGATCAATTAGTAGTCAATACTTGACTGCTTTGCTGATGGCTGCTCCTTTGGC CCTCGGAGATGTGGAAATCGAGATTGTTGATAAACTGATTTCCGTTCCTTATGTGGACATGACATTGAAGTTAATGGAAAGGTTTGGAGTCGCTGTCGAA CACAGTGGTAGTTGGGATCGTTTCTTTGTCAAAGGAGGACAAAAGTACAAGTCCCCTGGGAATGCTTATGTGGAAGGCGATGCTTCGAGTGCTAGTTACT TCCTGGCCGGTGCAGCCATCACTGGTGGGACTATCACTGTTGAAGGTTGTGGGACGAGCAGTTTGCAGGGGGACGTAAAATTCGCTGAAGTTCTCGAGAA AATGGGGGCGAAGGTTACTTGGACAGAGACCAGTGTTACTGTTACGGGACCTCCGAGAGATGCCTCTGGCAAAAAGCATTTGCGAGCTGTTGATGTTAAC ATGAACAAAATGCCAGACGTTGCGATGACTCTGGCTGTGGTTGCTCTCTATGCTGATGGGCCTACTGCCATAAGAGACGTGGCCAGTTGGAGAGTGAAGG AGACGGAGCGAATGATTGCAGTCTGCACCGAACTTCGGAAGCTGGGAGCAACAGTCGAAGAGGGACCGGATTACTGCATTATCACGCCGCCCGAGAAGCT AAGCATTGCCGAAATCGACACGTACGATGACCACAGAATGGCAATGGCCTTCTCGCTCGCTGCTTGTGCCGATGTTCCAGTCACCATAAGGGACCCCGGG TGCACTAAGAAGACATTTCCAGATTACTTTGAAGTCCTGGAAAGGTACACCAAGCATTGA
AA sequence Show only first row Show all	>Lus10000788 pacid=23168861 polypeptide=Lus10000788 locus=Lus10000788.g ID=Lus10000788.BGIv1.0 annot-version=v1.0 MAQVTKICGGANAVALPATFGTRRTKSISSSVSFRSSTSPPSLKQRRLLGNVAAAAAAAPLRVSASLTTAAEKASTVPEEIVLQPIKDISGIVTLPGSKS LSNRILLLAALSEGKTVVDNLLNSDDVHYMLGALKTLGLNVEHSSEQKRAIVEGRGGVFPVGKLGKNDIELFLGNAGTAMRPLTAAVTAAGGNSSYILDG VPRMRERPIGDLVVGLKQLGADVSCSSTSCPPVHVNAKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVDMTLKLMERFGVAVE HSGSWDRFFVKGGQKYKSPGNAYVEGDASSASYFLAGAAITGGTITVEGCGTSSLQGDVKFAEVLEKMGAKVTWTETSVTVTGPPRDASGKKHLRAVDVN MNKMPDVAMTLAVVALYADGPTAIRDVASWRVKETERMIAVCTELRKLGATVEEGPDYCIITPPEKLSIAEIDTYDDHRMAMAFSLAACADVPVTIRDPG CTKKTFPDYFEVLERYTKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10000788 [exp]	0	1
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	1.4	0.9874
AT5G26330			Cupredoxin superfamily protein...		Lus10021925 [exp]	1.4	0.9864
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10037189 [exp]	2.8	0.9825
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	3.5	0.9807
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	5.5	0.9831
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	6.7	0.9822
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	7.9	0.9797
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10027078 [exp]	8.1	0.9691
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	8.8	0.9763
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030897 [exp]	9.8	0.9656

Compare expression of checked genes

Lus10000788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.