Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45290 1106 / 0 Transketolase (.1) AT3G60750 1098 / 0 Transketolase (.1.2) AT4G15560 47 / 4e-05 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 45 / 0.0002 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030283 [exp] 1238 / 0 AT2G45290 1121 / 0.0 Transketolase (.1) Lus10004750 [exp] 1123 / 0 AT2G45290 1054 / 0.0 Transketolase (.1) Lus10031708 [exp] 1093 / 0 AT3G60750 1255 / 0.0 Transketolase (.1.2) Lus10031128 [exp] 990 / 0 AT2G45290 1130 / 0.0 Transketolase (.1) Lus10007839 [exp] 66 / 1e-12 AT3G60750 84 / 1e-19 Transketolase (.1.2) Lus10001322 [exp] 49 / 2e-05 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 48 / 2e-05 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 48 / 2e-05 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015519 [exp] 47 / 3e-05 AT4G15560 578 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068200 [exp] 1145 / 0 AT2G45290 1174 / 0.0 Transketolase (.1) Potri.002G146300 [exp] 1139 / 0 AT2G45290 1180 / 0.0 Transketolase (.1) Potri.010G224600 [exp] 712 / 0 AT3G60750 764 / 0.0 Transketolase (.1.2) Potri.006G171700 [exp] 52 / 8e-07 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 52 / 1e-06 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 46 / 7e-05 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 45 / 0.0002 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain CL0254 [flax] [poplar] THDP-binding PF00456 [flax] [poplar] Transketolase_N Transketolase, thiamine diphosphate binding domain
Representative CDS sequence Show only first row Show all	>Lus10000789 pacid=23168858 polypeptide=Lus10000789 locus=Lus10000789.g ID=Lus10000789.BGIv1.0 annot-version=v1.0 ATGGGCTGCGCGCCGATGGGCCACGTCATGTACGACGAGTTCATGAAGTTCAACCCTAAGAATCCTTACTGGTTCAACCGCGATCGCTTCGTTTTGTCCG CCGGACATGGATGTATGCTGCAGTACGCTCTGCTCCATCTCGCTGGCTACGACAGCTGCAAGTTGGAAGATTTGAAGAGCTTCCGTCAATGGGGAAGCAA AACTCCTGGCCACCCTGAGAACTTTGAGACTCCTGGCGTTGAAGTCACTACTGGTCCTCTTGGTCAGGGAATTGCAAATGCTGTAGGCTTGGCACTAGCA GAGAAGCACTTGGCAGCTCGCTTCAACAAGCCAGACTGCGAGATTGTCGACCATTACACATACTGCATTTTGGGAGATGGCTGTCAAATGGAAGGTGTTG CACATGAAGCTTGCTCCCTTGCTGGTCACTGGGGACTCGGCAAACTCATCGCCATGTATGACGACAACCATATCTCCATCGATGGAGACACCGAGATCGC CTTCACCGAGGATGTTGCTAAGCGCTTTGAGGCTCTCGGGTGGCACGTTATCTGGGTGAAGAACGGAAATAACGGGTACGATGAGATTCGCGCTGCTATC AAGGAGGCCAAAGCTGTCACTGACAAGCCTACTCTGATAAAGATTACTACAACCATTGGCTTCGGTTCGCCAAACAAGTCAAACTCGTACGCTGTTCACG GGAGTGCCTTGGGTGCCAAGGAAGTCGATGCCACTAGGAAGAACCTCGAGTGGCCACACGAGCCGTTCCATGTTCCCGAGGATGTTAAGAAGCACTGGAG TCGTCATATTGAAGCCGGTGCTTCCCTCGAAGCTGATTGGAACGCCAAGTTTGCAGCTTATGAGCAGAAGTATAAGGAAGATGCTGCAGTGCTGAAATCT ATTATCAGTGGAGAACTGCCTGCTGATTGGGAAAAAGCACTTCCGACCTACTCTTCAGATGGACCTGGAGATGCAACCAGAGGTCTATCCCAGCAAAACC TAAACGCACTTGCAGATGTTCTTCCCGCACTCGTTGGAGGCAGTGCAGATCTCGCTTCATCCAACTTAACCTTACTGAAGAAATCTGGAAACTTCCAGAA AGACACACCGGAAGGACGGAACATCCGGTTTGGAGTCCGAGAACACGGAATGGGTGCCATCTGCAACGGAATCGCCGCCCATTCGCTAGGGTTGATTCCT TACTGCGCCACATTCTTCGTCTTCACCGATTACATGAGGGCCGCGATAAGGATCTCGGCCCTGAGCCAGACTCGAGTCATCTATGTCATGACCCACGACT CGATTGGTCTGGGGGAGGACGGACCGACCCACCAGCCGATCGAGCACGTGGCCAGCTTCCGTGCCATGCCCAATGTCCTCATGCTCCGTCCGGCTGACGG TACCGAAACGGCCGGAGCGTACCGAGTTGCGGTCCTCAACAAGAAGAGACCGTCGGTCATTGCACTTTCGAGGCAGAAGGTCCCCCAGCTTGCAGGAACC TCCATCGAAGGCGTCGAAAAGGGCGGATACATCCTTTCCGACAACTCCTCCGATAACAAGCCGGATGTCATCTTGATGGGGACCGGAACCGAGCTGGAAC TGGCGGTTCAGGCGGCGGAGGTGCTGAGGAAGGAAGGGAAAGCGGTGAGAGTCGTTTCGTTCGTATCGTGGGAGCTTTACGGCGAGCAGTCCGAGGAGTA CAAGGAGAGCGTGCTTCCAGAAGCTGTGACAGCGAGGGTGAGTATTGAAGCTGGGTCGACGTTCGGGTGGGAGAGAATGGTGGGGAGCAAAGGGAAGGCT ATCGGGATCGATCATTTTGGTGCGAGTGCTCCGGCGCCGATATTGTACAAGGAGTTCGGCGTGACCGCAGATGCTGTGATTGCAGCAGCCAAAGAGCTAA TGTAA
AA sequence Show only first row Show all	>Lus10000789 pacid=23168858 polypeptide=Lus10000789 locus=Lus10000789.g ID=Lus10000789.BGIv1.0 annot-version=v1.0 MGCAPMGHVMYDEFMKFNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSCKLEDLKSFRQWGSKTPGHPENFETPGVEVTTGPLGQGIANAVGLALA EKHLAARFNKPDCEIVDHYTYCILGDGCQMEGVAHEACSLAGHWGLGKLIAMYDDNHISIDGDTEIAFTEDVAKRFEALGWHVIWVKNGNNGYDEIRAAI KEAKAVTDKPTLIKITTTIGFGSPNKSNSYAVHGSALGAKEVDATRKNLEWPHEPFHVPEDVKKHWSRHIEAGASLEADWNAKFAAYEQKYKEDAAVLKS IISGELPADWEKALPTYSSDGPGDATRGLSQQNLNALADVLPALVGGSADLASSNLTLLKKSGNFQKDTPEGRNIRFGVREHGMGAICNGIAAHSLGLIP YCATFFVFTDYMRAAIRISALSQTRVIYVMTHDSIGLGEDGPTHQPIEHVASFRAMPNVLMLRPADGTETAGAYRVAVLNKKRPSVIALSRQKVPQLAGT SIEGVEKGGYILSDNSSDNKPDVILMGTGTELELAVQAAEVLRKEGKAVRVVSFVSWELYGEQSEEYKESVLPEAVTARVSIEAGSTFGWERMVGSKGKA IGIDHFGASAPAPILYKEFGVTADAVIAAAKELM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	0	1
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	1.0	0.9661
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	1.7	0.9333
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	2.4	0.9402
AT1G74030		ENO1	enolase 1 (.1)		Lus10027255 [exp]	4.9	0.9164
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	5.1	0.8898
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10030115 [exp]	5.2	0.9097
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	5.5	0.9179
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	5.5	0.9186
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	5.7	0.9211
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	5.9	0.9169

Compare expression of checked genes

Lus10000789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.