Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45280 347 / 6e-120 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT3G22880 102 / 3e-25 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT5G20850 84 / 2e-18 ATRAD51 RAS associated with diabetes protein 51 (.1) AT5G57450 78 / 1e-16 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT2G28560 77 / 4e-16 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030284 [exp] 255 / 7e-87 AT2G45280 220 / 5e-72 RAS associated with diabetes protein 51C (.1.2) Lus10039383 [exp] 96 / 1e-22 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10006625 [exp] 92 / 3e-21 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10023341 [exp] 82 / 2e-17 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10038467 [exp] 74 / 3e-15 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10039928 [exp] 72 / 3e-14 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10027654 [exp] 72 / 3e-14 AT5G20850 531 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10004464 [exp] 67 / 8e-13 AT5G57450 325 / 2e-111 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068100 [exp] 341 / 2e-118 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2) Potri.010G081500 [exp] 101 / 6e-25 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.006G135200 [exp] 87 / 1e-19 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1) Potri.018G093100 [exp] 77 / 4e-16 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10000790 pacid=23168860 polypeptide=Lus10000790 locus=Lus10000790.g ID=Lus10000790.BGIv1.0 annot-version=v1.0 ATGACTCGCATTACCACATCTTGCGCGGATCTTGATTACATCCTTGGTGGAGGAATAAGCTGCAAAGAAATTACAGAAATCGGTGGCGTACCTGGAATTG GAAAAACACAATTGGGGTATATATACATTCCGCCGTCTTGTGGCGGTCTTGGTGGGAAAGCAATTTACATCGATACGGAAGGTAGTTTCATGGTGGAGCG AGTCCAACAAATTGCCGAAGCATGCACAGAGGACATGTCAGAATACAGAAGCTTCTTAGGCAAAGATGTTCAAGCTCGCCAAGTAGAAATGGGACCCAAG GATTTTCTGGAGAATATATACTACTTCCGTGCCTGCAGTTATACAGAGCAAATTGCGTTGGTGAATTACTTGGACAAGTTTATCTCAGAACACCCCAATG TTAAGTTGGTGGTCATTGATAGTGTCACTTCCCATTTCCGCCAAGATTTCGAGGACTTTGCTCAGAGAACCAGGGTACTGAGCGGAATGGCTCTGAAGCT GATGAAGCTTGCAAAGAAGTTCAATTTGGCCGTGGTTATATTGAATCAGGTGACAACGAAAATCATACAAGGTTCCTTCCAGTTAGTCCTTGCACTAGGT GATAGCTGGTCACATTCTTGCACGAATCGCTTAATCCTCTACTGGAACGGAGACCAAAGATACTCTTTTATCGACAAGTCGCCGTCTCTAAGGTCAGCAT CAGCTCCATATTCAGTTTCCAGCAGAGGAATTAGAAGTTGCTCTTCGAACTGTAAGCGTACTAGACTGATGTGA
AA sequence Show only first row Show all	>Lus10000790 pacid=23168860 polypeptide=Lus10000790 locus=Lus10000790.g ID=Lus10000790.BGIv1.0 annot-version=v1.0 MTRITTSCADLDYILGGGISCKEITEIGGVPGIGKTQLGYIYIPPSCGGLGGKAIYIDTEGSFMVERVQQIAEACTEDMSEYRSFLGKDVQARQVEMGPK DFLENIYYFRACSYTEQIALVNYLDKFISEHPNVKLVVIDSVTSHFRQDFEDFAQRTRVLSGMALKLMKLAKKFNLAVVILNQVTTKIIQGSFQLVLALG DSWSHSCTNRLILYWNGDQRYSFIDKSPSLRSASAPYSVSSRGIRSCSSNCKRTRLM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	0	1
AT1G03687			DTW domain-containing protein ...		Lus10018590 [exp]	1.0	0.8492
					Lus10019128 [exp]	3.2	0.8087
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	3.7	0.8484
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003353 [exp]	4.2	0.7945
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	10.6	0.8146
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	12.2	0.8190
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	12.4	0.7928
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	13.0	0.8025
AT1G50910			unknown protein		Lus10011153 [exp]	13.3	0.7829
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	14.1	0.7998

Compare expression of checked genes

Lus10000790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.