Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45270 607 / 0 GCP1 glycoprotease 1 (.1) AT4G22720 98 / 2e-22 Actin-like ATPase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030285 [exp] 710 / 0 AT2G45270 550 / 0.0 glycoprotease 1 (.1) Lus10013054 [exp] 74 / 9e-15 AT4G22720 352 / 6e-123 Actin-like ATPase superfamily protein (.1.2) Lus10029108 [exp] 73 / 1e-14 AT4G22720 352 / 3e-123 Actin-like ATPase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067800 [exp] 680 / 0 AT2G45270 655 / 0.0 glycoprotease 1 (.1) Potri.017G029200 [exp] 102 / 1e-23 AT4G22720 652 / 0.0 Actin-like ATPase superfamily protein (.1.2) Potri.007G129400 [exp] 50 / 4e-07 AT4G22720 240 / 4e-80 Actin-like ATPase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00814 [flax] [poplar] TsaD tRNA N6-adenosine threonylcarbamoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000791 pacid=23168864 polypeptide=Lus10000791 locus=Lus10000791.g ID=Lus10000791.BGIv1.0 annot-version=v1.0 ATGCTTTCTTCAACGATTTCCCGCCTTAATATCCTCTCGATTCGCCGTTCTTTTCTTACTCTCAGCACCATCAAGCCCCGCAAGCAACGGTTGTGGAACC CTCCCATTTACGCACACTCCGGCATATCTCTCACTTCTCGAGCATCCTCATCCTTACCGATTCAGCTTCCAGCGGCGTCTGAGAACGATTTGGTTGTTCT GGGAATCGAGACCAGCTGCGATGACACTGCAGCTGCCGTCGTTAGAGGCAATGGAGAAATTCTCAGCCAAGTTATATCATCTCAGGCAGAATTGCTTGCT CAGTATGGCGGTGTTGCTCCAAAAATGGCTGAAGAAGCTCATTCTTTGGTGATTGATCAGGTTGTGGAGGAAGCACTTGATAAAGCTAATTTGACTGCTG ACAATCTATCTGCAGTTGCTGTTACCATTGGTCCTGGTTTAGGCCTTTGTTTGCGAGTGGGAGTGCAGAAAGCTCATAAACTTGCCGGTGCGTTCAACTT ACCAATAGTTGGGATCCATCATATGGAGGCCCATGCTCTAGTAGCAAGGATCATTGAGCGCGATTTGCAATTTCCTTTCTTAGCATTGCTTATTTCTGGA GGACATAATTTGCTTGTCCTCGCACGTGATCTTGGTCACTACATACAACTCGGTACCACGATAGACGATGCAATTGGCGAGGCCTACGATAAGACTGCAA AATGGCTCGCACTCGATTTGAGAAGGAGCGGAGGGCCAGCTTTGGAAGAACTCGCTAAATCGGGGAACTCTGATGCCGTCAAATTTTCAACACCAATGAA GCAACACAAGGACTGTAACTTTTCCTATGCTGGCCTGAAAACTCAAGTTAGGCTGGCCATCGAATCCAGAAATATAAACGTTGAAATTCCCATTTCTGCC GCTAGTGACCAAGATAGAAGCTCACGGGCTGACATCGCAGCTTCATTTCAGCGAGTAGCAGTCTTACACCTAGAGGAAAGGTGTGACCGCGCAATTACTT GGGCGAGAAGGATTGAACCGTCGATAAAACATCTGGTGGTATCTGGAGGGGTTGCCTCAAACAAGTATGTGAGGGCTCAACTTCAGGCGGTAGCCGAGAA AAACAATCTGAAGCTTGTTTGCCCTCCTCCTAGCCTGTGCACTGATAATGGTGTAATGGTGGCTTGGACCGGAATCGAGCACTTCCGCATGGGACGATTT GATCCCCCACCACCTACAGACGAACCTGAAGATTTCAAGTACGATATACGAGCAAGATGGCCGTTAGGGGAGGAGTATGCGGAAGGAAGAAGCGAAGCCC GGTCTCGGAGGACAGCTCGGATTCATCCATCTCTAACATCTATCATTCAAGGTTCAACTCATCAGCAGCAAGCAATACAGTGA
AA sequence Show only first row Show all	>Lus10000791 pacid=23168864 polypeptide=Lus10000791 locus=Lus10000791.g ID=Lus10000791.BGIv1.0 annot-version=v1.0 MLSSTISRLNILSIRRSFLTLSTIKPRKQRLWNPPIYAHSGISLTSRASSSLPIQLPAASENDLVVLGIETSCDDTAAAVVRGNGEILSQVISSQAELLA QYGGVAPKMAEEAHSLVIDQVVEEALDKANLTADNLSAVAVTIGPGLGLCLRVGVQKAHKLAGAFNLPIVGIHHMEAHALVARIIERDLQFPFLALLISG GHNLLVLARDLGHYIQLGTTIDDAIGEAYDKTAKWLALDLRRSGGPALEELAKSGNSDAVKFSTPMKQHKDCNFSYAGLKTQVRLAIESRNINVEIPISA ASDQDRSSRADIAASFQRVAVLHLEERCDRAITWARRIEPSIKHLVVSGGVASNKYVRAQLQAVAEKNNLKLVCPPPSLCTDNGVMVAWTGIEHFRMGRF DPPPPTDEPEDFKYDIRARWPLGEEYAEGRSEARSRRTARIHPSLTSIIQGSTHQQQAIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	0	1
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	1.0	0.9281
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	2.4	0.9161
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	3.2	0.9168
AT5G62650			Tic22-like family protein (.1)		Lus10039294 [exp]	3.5	0.8831
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	4.5	0.8994
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	4.9	0.8521
AT2G06025			Acyl-CoA N-acyltransferases (N...		Lus10021559 [exp]	5.2	0.8645
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	5.3	0.8820
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	5.9	0.8977
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	8.4	0.8474

Compare expression of checked genes

Lus10000791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.