Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 213 / 5e-64 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 209 / 2e-62 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 173 / 6e-49 Major facilitator superfamily protein (.1) AT3G54140 152 / 1e-41 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 135 / 4e-35 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 134 / 4e-35 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G26690 128 / 9e-33 Major facilitator superfamily protein (.1) AT5G46050 127 / 1e-32 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 127 / 1e-32 Major facilitator superfamily protein (.1) AT2G02020 120 / 2e-30 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030287 [exp] 440 / 6e-152 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10000794 [exp] 378 / 2e-131 AT1G32450 242 / 4e-75 nitrate transporter 1.5 (.1) Lus10030286 [exp] 379 / 8e-129 AT1G32450 446 / 7e-151 nitrate transporter 1.5 (.1) Lus10000673 [exp] 206 / 3e-61 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10030945 [exp] 201 / 4e-59 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 201 / 4e-59 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 198 / 4e-58 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10013736 [exp] 166 / 4e-46 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 163 / 5e-45 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088800 [exp] 243 / 3e-75 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.001G145200 [exp] 241 / 1e-74 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 213 / 4e-64 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.003G212900 [exp] 177 / 2e-50 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.001G013400 [exp] 168 / 5e-47 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.011G120000 [exp] 144 / 1e-38 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.010G100200 [exp] 144 / 1e-38 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G258900 [exp] 139 / 2e-36 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 138 / 2e-36 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 135 / 2e-35 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10000792 pacid=23168857 polypeptide=Lus10000792 locus=Lus10000792.g ID=Lus10000792.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGAGTACTGAGCATCCTGAAATTCTGTTTCAGCATTTGGAGTTGGAGAAAGAAGGAGAATACACCGGAGACAGGACAGTTGATCGGCATG GGAAACCAGCTTTGAAGAACAAGAGCGGTGGTTGGAGATGTGGCCTCCTTGTTTTGGTGAATCTGTGGCTGATGTATGTATCCGTAGCTGGAGTGTCAGT GAATATGGTACTGTTCGAGAAATCAGTACTAAGGCAAACCAACGAACAAGCTGCCAACTCCTTCAGTAATTGGGTTGGGACTTCTTATCTCTTCGGCCTC CTTGGTGCTCTCCTTAGCGACTCTTCTCTCGGCCGCTTCTTCACTTGTATCCTTTCTCAAGCCTTTCTCATTGCGGGAGCAACATCACTGACCTTGATCA CACAATTCCTCCTCCTAAAGCCTAAAGGCTGCGGCACACTAACCTCACAATGCGACCCGCCAAGCCCCTTCGAGGTGGCCATCTACTATATTTCGATCTA CCTGATAGCATTCGGGATTGGAGCAGCGGACCCTGCACTGGCCGCGCTGGGTGCAGACCAGTTCGACGAGGAGGACCCTGACGAGAAGCATTCCAAGACC TCCTTCTACAGCTACTTCTACGTAGCCGTGACCCTCGGTTGCCTGGTAGCCGAAACCGGGTTGGCTTACTTGTACAGCTTGGGCCACTGGATATTGGGGC TTTGGCTGTGCACTGCGGCTTCTGTAGTTGCATATTTGTTGCTCTTGTGTGGGACTTTGAGGTACAGGCGTTTCAAGCCTGCTTCGGGAAACCCCGCCTC GAGATTCTCCCAGGTGATCGTGGCTTCGGTTCGGAAGAAGATGGGGCTTGAGGTTCCGGGGAGTAATGAGCAAGTGCTTTACCATCAGCCGCTGAATGAA AGAGGTGATGGTGGTAATAGGAGGATTCTCCGCACAAATGATTTCAGGCAAGTGTGTTGCTTGTGTAGCAAGTTTTCCTCTCTATCTTTGTTGGTTAAAA GGGCTGCTAACCAGCCGAGTTAA
AA sequence Show only first row Show all	>Lus10000792 pacid=23168857 polypeptide=Lus10000792 locus=Lus10000792.g ID=Lus10000792.BGIv1.0 annot-version=v1.0 MATESTEHPEILFQHLELEKEGEYTGDRTVDRHGKPALKNKSGGWRCGLLVLVNLWLMYVSVAGVSVNMVLFEKSVLRQTNEQAANSFSNWVGTSYLFGL LGALLSDSSLGRFFTCILSQAFLIAGATSLTLITQFLLLKPKGCGTLTSQCDPPSPFEVAIYYISIYLIAFGIGAADPALAALGADQFDEEDPDEKHSKT SFYSYFYVAVTLGCLVAETGLAYLYSLGHWILGLWLCTAASVVAYLLLLCGTLRYRRFKPASGNPASRFSQVIVASVRKKMGLEVPGSNEQVLYHQPLNE RGDGGNRRILRTNDFRQVCCLCSKFSSLSLLVKRAANQPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000792 [exp]	0	1
					Lus10005398 [exp]	2.2	0.7802
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	6.6	0.8266
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	10.2	0.7711
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10035443 [exp]	15.4	0.7377
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10039704 [exp]	25.5	0.7203
AT3G14470			NB-ARC domain-containing disea...		Lus10040208 [exp]	26.8	0.6579
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	28.4	0.7145
					Lus10005187 [exp]	28.8	0.7145
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	29.2	0.7145
					Lus10002152 [exp]	29.6	0.7145

Compare expression of checked genes

Lus10000792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.