Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 272 / 2e-87 NRT1.5 nitrate transporter 1.5 (.1) AT5G19640 249 / 8e-79 Major facilitator superfamily protein (.1) AT4G21680 234 / 5e-73 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT3G54140 201 / 1e-60 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 193 / 1e-57 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 189 / 7e-56 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 188 / 1e-55 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 175 / 5e-51 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G62680 167 / 8e-48 Major facilitator superfamily protein (.1) AT1G27080 166 / 3e-47 NRT1.6 nitrate transporter 1.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030286 [exp] 506 / 4e-180 AT1G32450 446 / 7e-151 nitrate transporter 1.5 (.1) Lus10030287 [exp] 454 / 3e-158 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 265 / 2e-84 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10030945 [exp] 263 / 2e-83 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 261 / 4e-83 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 260 / 2e-82 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10039204 [exp] 240 / 5e-75 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10013736 [exp] 240 / 5e-75 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10011055 [exp] 205 / 5e-62 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088800 [exp] 265 / 5e-85 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.001G145200 [exp] 265 / 1e-84 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 256 / 1e-81 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.014G179400 [exp] 254 / 1e-80 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.003G212900 [exp] 253 / 3e-80 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248600 [exp] 206 / 9e-63 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 205 / 5e-62 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 196 / 1e-58 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 191 / 1e-56 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 190 / 1e-56 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10000793 pacid=23168856 polypeptide=Lus10000793 locus=Lus10000793.g ID=Lus10000793.BGIv1.0 annot-version=v1.0 ATGGTAACCCTTGAGGACATGAATCAGAGATCGCAAGGCCTCCCTCCAAATCCATGGCGGCTCTGCACAGTCACGCAAGTCGAAGAAGCAAAGTGCATCC TACGGCTGATGCCGATCTGGCTCTGCTCGATCCCTTCCTCCTTAGTATTCGTACAAGCCATGTCTCTCTTCCTCGAACAAGGCACGGCCATGAACAACAA GCTCGGTAACTCGACCTTCCAGTTCCCACCGGCCAGCATGCCTGTCTTCGACATGGCCACAACCTCAACTTCCATCCTCCTCTACACCCACCTCATCCTC CCCTTATACATCAACCTCACAAAAAAACAATCAACTCCCCCCAAGCCGATGAACGAGTTGCACAAAATCGAGATCGGGCTAGCATTCGGAATAGCATCCA TGGTAGCCGCAGGGATCACGGAGCAAGCGAGGCTTAGACATGCTGTGGGTGAAACAAGCTCGTTGAGTATCTTCTGGTTGGCTCCGCAGTACGTGCTGGT GGGGGTTTCCGAGGCGCTTGTGGCGGTTGCTCAGATGGAGTTCTTCTCGGCTCAGGCTCCCCATGCGATGAAGAGCTTTGGGATGGGGCTGCCGATGATT TCGACTGCGCTTGGTAACTATTTCTGCAGCATCCTTCTTACTGTGGTGATGAAGATCACAGCTAGAGATGATGAGCATCCCGGATGGGTCCCACCGAATC TGAACGACGGTCATTTGGATAGATTCTACTTCTTGTCTGCAGCTATACTGGTTTTGAATCTGGGAATCTTTGTAGCTGTTGCTAAGAAGTTCAAACCTAT TTCGTTGGAAAAGCGTTAG
AA sequence Show only first row Show all	>Lus10000793 pacid=23168856 polypeptide=Lus10000793 locus=Lus10000793.g ID=Lus10000793.BGIv1.0 annot-version=v1.0 MVTLEDMNQRSQGLPPNPWRLCTVTQVEEAKCILRLMPIWLCSIPSSLVFVQAMSLFLEQGTAMNNKLGNSTFQFPPASMPVFDMATTSTSILLYTHLIL PLYINLTKKQSTPPKPMNELHKIEIGLAFGIASMVAAGITEQARLRHAVGETSSLSIFWLAPQYVLVGVSEALVAVAQMEFFSAQAPHAMKSFGMGLPMI STALGNYFCSILLTVVMKITARDDEHPGWVPPNLNDGHLDRFYFLSAAILVLNLGIFVAVAKKFKPISLEKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	0	1
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10003743 [exp]	2.4	0.8926
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041249 [exp]	2.8	0.9334
AT1G06980			unknown protein		Lus10026407 [exp]	2.8	0.9551
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10039704 [exp]	5.0	0.8422
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000792 [exp]	6.6	0.8266
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010898 [exp]	11.7	0.8023
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	13.6	0.8309
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	14.7	0.8917
AT3G18950			Transducin/WD40 repeat-like su...		Lus10021014 [exp]	20.2	0.7905
AT1G06980			unknown protein		Lus10042244 [exp]	27.1	0.8909

Compare expression of checked genes

Lus10000793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.