Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 188 / 9e-55 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 182 / 1e-52 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 133 / 1e-34 Major facilitator superfamily protein (.1) AT3G54140 131 / 5e-34 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 116 / 9e-29 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 116 / 1e-28 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT2G02020 113 / 6e-28 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G62200 112 / 3e-27 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G46040 111 / 6e-27 Major facilitator superfamily protein (.1) AT1G12110 109 / 3e-26 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030287 [exp] 519 / 0 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10000792 [exp] 394 / 1e-137 AT1G32450 256 / 2e-80 nitrate transporter 1.5 (.1) Lus10030286 [exp] 259 / 3e-82 AT1G32450 446 / 7e-151 nitrate transporter 1.5 (.1) Lus10000673 [exp] 183 / 7e-53 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10030945 [exp] 177 / 1e-50 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 177 / 1e-50 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 173 / 4e-49 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10035516 [exp] 132 / 3e-34 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011786 [exp] 131 / 6e-34 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145200 [exp] 223 / 7e-68 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 221 / 2e-67 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 179 / 1e-51 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 136 / 8e-36 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.010G068100 [exp] 135 / 2e-35 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.003G212900 [exp] 133 / 1e-34 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.008G170100 [exp] 132 / 3e-34 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G100200 [exp] 124 / 1e-31 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 123 / 2e-31 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G258900 [exp] 122 / 7e-31 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10000794 pacid=23168863 polypeptide=Lus10000794 locus=Lus10000794.g ID=Lus10000794.BGIv1.0 annot-version=v1.0 ATGGCGATGGAGAGTTCTGCACATCCCGACAGCGGCAGCATTCTGTTTCAGCATTTGGAGAAAGGAGTCGACTATGATTCGTCGTCAAGCTACACGAGAG ATGGAACAGTTGATTGGCATGGGAAACCAGCTTTGAAGAGCAAGAACGGTGGTTGGAGATGTGGCCTCCTTGTTTTCTTGAATCTAGGGCTGCTGACGTT ATCGATAGCTGGAGTGTCAATGAGCATGGCCCTCTTTGAGAAATCGGTACTAAGACAAACCAACGCAAGAGCCGCAGACACCTTCAGTAATTGGATAGGG ACTTGCTACCTCTTCTCCCTCTTCGGTGCCCTCCTCAGTGACTCCCCTCTTGGCTGCTTCTACACTGTCATCGTCTCTGAAATCTTTCTTATAGTGAGAG TTATAATACTGGCCTTGATCACACAATTCCTCCTCCTAAAGCCTAAAGGCTGCGGCACGCTGGCATCACCATGCAAACCCCCAACCCCATTCCAGCTCGC CATCTACTACATCTCCATCTACATAATAGCATTCGGGAGCGGAGCAGCGGACCCAGAGCTGGCCGCGCTGGAAGCCGATCAGTTCGACGAGGAGAACCCC GACGAGAAGCATTCCAAGACCTCCTTCTACAGCTACTTCTACGTGGCGTTGAGTCTCGGTTGCTTGGCGGCAGAAACCGGTCTGGCCTGCGTGTACAGCT TTGGCCACTGCGTTTTGGGGTTCTGGCTTTGCACTTTGGCTGCTGTCGGTGCGTATCTGTTGCTCTTGTGTGGCTCTTTCAGGTACAGGCATTCGAAGCC TGCTTCCGGAAACCCGGTCTCGAGATTCTCCCAGGTGATCGTGGCTTCGGTTCTGAAGATGAAGCTCGAGGTTCCGGTGAATAATGAGCAAGGACTTTAC TATCAGCCCCTCAACGAAAGAGGCGATACTGGTAATAGGAGGATTCTCGGTACAAATGGTTTCAGGGCAGTGTTTCTTTTATAG
AA sequence Show only first row Show all	>Lus10000794 pacid=23168863 polypeptide=Lus10000794 locus=Lus10000794.g ID=Lus10000794.BGIv1.0 annot-version=v1.0 MAMESSAHPDSGSILFQHLEKGVDYDSSSSYTRDGTVDWHGKPALKSKNGGWRCGLLVFLNLGLLTLSIAGVSMSMALFEKSVLRQTNARAADTFSNWIG TCYLFSLFGALLSDSPLGCFYTVIVSEIFLIVRVIILALITQFLLLKPKGCGTLASPCKPPTPFQLAIYYISIYIIAFGSGAADPELAALEADQFDEENP DEKHSKTSFYSYFYVALSLGCLAAETGLACVYSFGHCVLGFWLCTLAAVGAYLLLLCGSFRYRHSKPASGNPVSRFSQVIVASVLKMKLEVPVNNEQGLY YQPLNERGDTGNRRILGTNGFRAVFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000794 [exp]	0	1
					Lus10007416 [exp]	1.4	0.9781
					Lus10009719 [exp]	12.9	0.9768
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	15.7	0.9765
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	18.1	0.9765
					Lus10003763 [exp]	20.2	0.9765
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	22.2	0.9765
AT2G23810		TET8	tetraspanin8 (.1)		Lus10027256 [exp]	24.0	0.9765
					Lus10007403 [exp]	25.6	0.9765
AT1G76250			unknown protein		Lus10008273 [exp]	27.2	0.9765
					Lus10009191 [exp]	28.6	0.9765

Compare expression of checked genes

Lus10000794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.