Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08900 619 / 0 ARGAH1 arginine amidohydrolase 1, arginase (.1) AT4G08870 579 / 0 ARGAH2 arginine amidohydrolase 2, Arginase/deacetylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030288 [exp] 685 / 0 AT4G08900 615 / 0.0 arginine amidohydrolase 1, arginase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146200 [exp] 643 / 0 AT4G08900 625 / 0.0 arginine amidohydrolase 1, arginase (.1) Potri.014G067700 [exp] 640 / 0 AT4G08900 614 / 0.0 arginine amidohydrolase 1, arginase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00491 [flax] [poplar] Arginase Arginase family
Representative CDS sequence Show only first row Show all	>Lus10000795 pacid=23168859 polypeptide=Lus10000795 locus=Lus10000795.g ID=Lus10000795.BGIv1.0 annot-version=v1.0 ATGTCGATGATACTGCGGAGGGGGATACACTACTTGGAGAGACTCAAGGCCGCAAATGTTCCTAATGATTTGATTGAGAAGGGCCAGAACCGGGTCATAG ACGCTTCCCTCACTCTAATCCGAGAGAGAGCAAAGCTCAAGGGAGAGCTTCTACGTGCTTTGGGAGGAGTTACAGCAACGGCAACATTGCTTGGAGTACC TCTGGGGCATAACTCTTCATTTCTGCAAGGCCCAGCTTTCGCTCCTCCTCGAATTAGGGAGGCCATATGGTGTGATAGCACAAACTCGACCACCGAAGAA GGGAAAGAGTTGCATGATCCACGTGTTCTAACTGATGTTGGTGATGTCCCTGTACAAGAAATCCGAGATTGTGGTGTGGATGACGACCGATTGATGAATG TCATAAGTGAGTCGGTTAAGGTTGTGATGGAAGAGGCACCGTTACGCCCTTTGGTTCTAGGTGGAGATCATTCAATATCTTTTCCAGTAGTAAGAGCTGT ATCTGAGAAACTTGGAGGGCCGGTGGATATCCTTCATCTTGATGCGCATCCTGATATCTATGATTGCTTTGAAGGAAACAAATACTCTCATGCTTCTTCA TTTGCCCGGATCATGGAAGGAGGTTATGCTCGGCGACTATTGCAAGTGGGCATAAGATCTATAACAAAGGAAGGCCGCGAGCAAGGAAAAAGGTTTGGAG TTGAACAGTACGAAATGCGAACTTTCTCCAAAGACAGAGAGCTTTTAGAAAATCTGAAACTCGGGGAAGGGGTGAAAGGCGTGTACATCTCAGTAGACGT GGACTGTCTCGATCCAGCCTTTGCTCCCGGTGTTTCTCACATAGAGCCCGGCGGCCTCTCTTTCCGTGATGTTCTCAACATCCTCCACAACCTTCAAGCT GATGTCGTTGCAGCAGATGTCGTCGAATTCAACCCGCAAAGAGACACAGTTGACGGGATGACGGCCATGGTTGCTGCTAAGCTAGTCAGAGAGCTCACTG CAAAAATATCTAAATGA
AA sequence Show only first row Show all	>Lus10000795 pacid=23168859 polypeptide=Lus10000795 locus=Lus10000795.g ID=Lus10000795.BGIv1.0 annot-version=v1.0 MSMILRRGIHYLERLKAANVPNDLIEKGQNRVIDASLTLIRERAKLKGELLRALGGVTATATLLGVPLGHNSSFLQGPAFAPPRIREAIWCDSTNSTTEE GKELHDPRVLTDVGDVPVQEIRDCGVDDDRLMNVISESVKVVMEEAPLRPLVLGGDHSISFPVVRAVSEKLGGPVDILHLDAHPDIYDCFEGNKYSHASS FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDRELLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10000795 [exp]	0	1
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10034331 [exp]	6.8	0.8265
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	11.8	0.8395
AT1G25500			Plasma-membrane choline transp...		Lus10041476 [exp]	31.8	0.7877
AT3G50520			Phosphoglycerate mutase family...		Lus10026068 [exp]	32.4	0.7839
AT1G48320			Thioesterase superfamily prote...		Lus10011142 [exp]	43.9	0.7720
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	51.9	0.7729
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10031553 [exp]	61.0	0.7762
AT1G67910			unknown protein		Lus10026701 [exp]	87.7	0.7581
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	92.4	0.7670
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	129.0	0.7595

Compare expression of checked genes

Lus10000795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.