Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16195 55 / 7e-10 Plant self-incompatibility protein S1 family (.1) AT5G12060 54 / 9e-10 Plant self-incompatibility protein S1 family (.1) AT3G26880 47 / 2e-07 Plant self-incompatibility protein S1 family (.1) AT5G12070 47 / 5e-07 Plant self-incompatibility protein S1 family (.1) AT3G17080 45 / 2e-06 Plant self-incompatibility protein S1 family (.1) AT3G16970 45 / 2e-06 Plant self-incompatibility protein S1 family (.1) AT1G04645 44 / 3e-06 Plant self-incompatibility protein S1 family (.1) AT4G29035 42 / 3e-05 Plant self-incompatibility protein S1 family (.1) AT5G04350 40 / 9e-05 Plant self-incompatibility protein S1 family (.1) AT4G16295 40 / 0.0001 SPH1 S-protein homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011897 [exp] 69 / 2e-15 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10002747 [exp] 67 / 4e-15 AT5G04350 57 / 3e-11 Plant self-incompatibility protein S1 family (.1) Lus10016329 [exp] 67 / 1e-14 AT5G04350 57 / 3e-11 Plant self-incompatibility protein S1 family (.1) Lus10023196 [exp] 67 / 1e-14 AT2G06090 54 / 4e-10 Plant self-incompatibility protein S1 family (.1) Lus10023085 [exp] 64 / 7e-14 AT5G12060 53 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10023195 [exp] 64 / 1e-13 AT5G12060 53 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10023194 [exp] 64 / 1e-13 AT2G06090 49 / 3e-08 Plant self-incompatibility protein S1 family (.1) Lus10018785 [exp] 62 / 6e-13 AT4G16295 50 / 1e-08 S-protein homologue 1 (.1) Lus10022826 [exp] 62 / 8e-13 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148630 [exp] 54 / 1e-09 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.016G066900 [exp] 52 / 7e-09 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 50 / 2e-08 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.010G008300 [exp] 50 / 2e-08 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 49 / 6e-08 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 44 / 5e-06 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 44 / 5e-06 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.015G130300 [exp] 44 / 6e-06 AT3G17080 52 / 3e-09 Plant self-incompatibility protein S1 family (.1) Potri.017G144361 [exp] 39 / 0.0004 AT4G24975 110 / 1e-31 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10000799 pacid=23146029 polypeptide=Lus10000799 locus=Lus10000799.g ID=Lus10000799.BGIv1.0 annot-version=v1.0 ATGGTTATCCCCACGAGGAAATCAACTTTAGCAACATCGGTAATTCTTCTCCAATCAAAGGTGATTACTATCAGCATCATCATCATCATCATGGTTGGTC CCACAAGGGCCAATTGGGTCTCAGTCACCAATAACTTAACCAGCCACCTTATTGTGATAGCACACTGCCGGTCGGCCGATGATGACATCAAAGCGCAACT CCTCCCCGCCGGTGAGGAGATGCGATGGGATTTCAGACCGCGGTGGTTCGGAACCACGCACTTCTGGTGTCACGTGACCGTGCAGGACAAGCGTCTCAGT TTTGTTGCGTATGATCAAGCTAGAGACGTACTACACTCCGACTATGTCTATGGTATAGTTATGAATGATGGGGTTCACTTGAAGTACTATGATTTTTACA ATGGAACTTGGCAATTTGACTTTACTGCATGGAACCCTTCATTAATTAATTAA
AA sequence Show only first row Show all	>Lus10000799 pacid=23146029 polypeptide=Lus10000799 locus=Lus10000799.g ID=Lus10000799.BGIv1.0 annot-version=v1.0 MVIPTRKSTLATSVILLQSKVITISIIIIIMVGPTRANWVSVTNNLTSHLIVIAHCRSADDDIKAQLLPAGEEMRWDFRPRWFGTTHFWCHVTVQDKRLS FVAYDQARDVLHSDYVYGIVMNDGVHLKYYDFYNGTWQFDFTAWNPSLIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12060			Plant self-incompatibility pro...		Lus10000799 [exp]	0	1
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	4.5	0.8773
					Lus10033149 [exp]	6.3	0.8773
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	7.7	0.8773
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	8.9	0.8773
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	10.0	0.8773
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	11.0	0.8773
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	11.8	0.8773
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	12.6	0.8773
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	13.4	0.8773
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10005213 [exp]	13.8	0.8674

Compare expression of checked genes

Lus10000799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.