Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11840 258 / 2e-81 PUB24 plant U-box 24 (.1) AT2G35930 219 / 3e-67 PUB23 plant U-box 23 (.1) AT3G52450 204 / 6e-61 PUB22 plant U-box 22 (.1) AT1G66160 110 / 2e-26 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G19380 107 / 1e-25 PUB25 plant U-box 25 (.1) AT5G37490 101 / 3e-23 ARM repeat superfamily protein (.1) AT1G49780 99 / 2e-22 PUB26 plant U-box 26 (.1) AT3G54850 87 / 3e-18 ATPUB14 plant U-box 14 (.1) AT1G71020 83 / 5e-17 ARM repeat superfamily protein (.1.2) AT1G23030 80 / 7e-16 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008368 [exp] 737 / 0 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10004191 [exp] 254 / 2e-78 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 244 / 2e-76 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10013584 [exp] 242 / 6e-76 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 237 / 5e-74 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10016166 [exp] 213 / 2e-64 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 211 / 7e-64 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10001079 [exp] 135 / 6e-35 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10004095 [exp] 115 / 1e-29 AT2G35930 228 / 3e-73 plant U-box 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G216300 [exp] 387 / 9e-133 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.009G016100 [exp] 384 / 3e-131 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.006G202700 [exp] 325 / 3e-108 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 298 / 9e-98 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.016G069400 [exp] 246 / 9e-78 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 239 / 9e-75 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 236 / 8e-74 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 227 / 5e-70 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.002G174500 [exp] 164 / 3e-46 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 148 / 4e-40 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10000800 pacid=23146028 polypeptide=Lus10000800 locus=Lus10000800.g ID=Lus10000800.BGIv1.0 annot-version=v1.0 ATGGAAGACATTGAAATCCCAGAATACTTCATCTGTCCAATTTCGCTGGAAATGATGAAAGACCCAGTGACCGCCATCACCGGCATCACCTACGATCGCG AGAGCATCGAACACTGGCTCAACAGTTCCTCACCACCCTCCGTAGTAGTCTGCCCTGTATCCAAACAGCCCCTACAAAGAAACTCAGACCTAACACCAAA CCACACCCTCCGGCGCCTCATACAAGGCTGGTGCACCCTCAACGCACAAAAGAGAATCCCCACTCCCAAATCCCCTCTCAACAACTCTCATATTGCCAAG CTTCTCCGTGACCTCCACAACGCTGGTACTGATTCCTCATCCTCACTCCAGGCCGTCAGCAAACTAGACATCCTTGCTTCTGAGAGCGATCGCAACCGAG CCTGCATTGCCGACTCAGGAGCCGCCAAGTCTTTGGTCTCCTTCATATTGAACATGTATAAGGAGAGACGAAGAACCCAAGGATTGGAGCAAGCACTTCG AGTTTCCAATCTGGCTTGGAACCACACCCCTGAACCAACTGTTAAGCTTCTCGTTAGAGAAAACGAAGGCCAACTCATGAACTCACTCACCTGGATTATT TCCTGTTCCAAAGACGACGAGGTGGTAGTGACACAAGCAATTTGTCTTTTGAATAGAGTGATCCGGTTCGCTAGTGCCACTTGTTTGGAGAGATTAGATT TGGACTTATTCTTCCGAGTGGTTGTCACAAGTGTATTGGGAAAGCGGACCGCCTCCAAGCTTGCGAGACGGTCCGCTCTCCAGATGCTGATAGAGGCATG TCCTTGGGGTGCCAACAGGGCCAAAATGGTGGAGGTGAATGCCCTCCACGAGCTAATTGAGATGGAGTTAGATCAACAACAACAACCGAGTAATAATAAC AATAAGCATACCACGGAGCTAGCGTTCGATCTGCTTGCTAGGCTGTGCACAAGTGCGGATGGGAGGGAGAAGTTGCTGGGACACGCAGCAGGGTTAGCAG TGGTAGCAAAGAAGACTTTGAGGGTTTCTGCAGCGACAGACGACCGGGCAGTGCAGATAATGGGGATGATAGCCAAGTTGGGGTGCGGGAAAGAGGAGAT GTTGAGGGTCGGGGGTGTGACGAAGCTGTGCATGGTGATTCAGGCTGATTGTGCCGCTTATTTGAAAGACAAAGCTAGGAAGATTTTGAGGGAAAATTCT TCCTTCTGGAACAACTCTCCTTGCGTTGCTGTTTATCTCCTCACTTGGCATCCGCGTTAA
AA sequence Show only first row Show all	>Lus10000800 pacid=23146028 polypeptide=Lus10000800 locus=Lus10000800.g ID=Lus10000800.BGIv1.0 annot-version=v1.0 MEDIEIPEYFICPISLEMMKDPVTAITGITYDRESIEHWLNSSSPPSVVVCPVSKQPLQRNSDLTPNHTLRRLIQGWCTLNAQKRIPTPKSPLNNSHIAK LLRDLHNAGTDSSSSLQAVSKLDILASESDRNRACIADSGAAKSLVSFILNMYKERRRTQGLEQALRVSNLAWNHTPEPTVKLLVRENEGQLMNSLTWII SCSKDDEVVVTQAICLLNRVIRFASATCLERLDLDLFFRVVVTSVLGKRTASKLARRSALQMLIEACPWGANRAKMVEVNALHELIEMELDQQQQPSNNN NKHTTELAFDLLARLCTSADGREKLLGHAAGLAVVAKKTLRVSAATDDRAVQIMGMIAKLGCGKEEMLRVGGVTKLCMVIQADCAAYLKDKARKILRENS SFWNNSPCVAVYLLTWHPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020935 [exp]	3.7	0.8711
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	4.7	0.8890
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	7.7	0.8925
AT2G15760			Protein of unknown function (D...		Lus10012069 [exp]	9.3	0.8000
AT5G25930			Protein kinase family protein ...		Lus10012949 [exp]	9.5	0.8586
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	9.9	0.8881
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	10.8	0.8275
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	14.2	0.7947
					Lus10005523 [exp]	15.4	0.8253
AT3G50150			Plant protein of unknown funct...		Lus10039780 [exp]	16.5	0.8340

Compare expression of checked genes

Lus10000800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.