Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015702 [exp] 222 / 4e-72 ND 38 / 0.004 Lus10032804 [exp] 210 / 2e-67 ND / Lus10005203 [exp] 192 / 2e-61 ND / Lus10005265 [exp] 179 / 2e-56 ND / Lus10010778 [exp] 178 / 2e-56 ND / Lus10012087 [exp] 181 / 2e-55 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10003364 [exp] 175 / 5e-55 ND / Lus10020608 [exp] 173 / 2e-54 ND / Lus10010402 [exp] 174 / 1e-53 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000801 pacid=23175265 polypeptide=Lus10000801 locus=Lus10000801.g ID=Lus10000801.BGIv1.0 annot-version=v1.0 ATGTGGTTGGAGCAGGACTTCATCAGATTTCACCGGCTACACCTTATGTTCGAGAGGGCGTCGGCTGGTGGGGATGTTGGTCCAGGGTACATGGAGTGGT TCCTCGAGCATAGTCACCCACGCATCGTGGCCCCGGCTAACCCCGGTGTTGGAGTTCCGGCTGAGCTGATTACACAGCGAGTGTTCGATGGTATGGCCTC CTACTTCGATGGTACGCTTGGGCGGCAGCACGCAGACTCTCTTCAGGAGTACTACGATCACATGGAGGGGCTTCGGGTGCAGTTTGAGGATCTGTATACG GGGTATCGGAGCCAGAGAGAGGGGTTTCCGATTTACTCGATCCCTTTCGAATCGGTAGGCCTCGAGTCCTTCCGATTTTTAGGAAGCGGAAGTCCTTCCG AATTTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGT CCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTT TCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAA GTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCC TTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCG GAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTAGGGTTTCGGAAGTCCCTTCCGAAAGTA GGGTTTCGGAAGTCCCTTCCGAAAGTTAG
AA sequence Show only first row Show all	>Lus10000801 pacid=23175265 polypeptide=Lus10000801 locus=Lus10000801.g ID=Lus10000801.BGIv1.0 annot-version=v1.0 MWLEQDFIRFHRLHLMFERASAGGDVGPGYMEWFLEHSHPRIVAPANPGVGVPAELITQRVFDGMASYFDGTLGRQHADSLQEYYDHMEGLRVQFEDLYT GYRSQREGFPIYSIPFESVGLESFRFLGSGSPSEFRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRV SEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVS EVPSESRVSEVPSESRVSEVPSESRVSEVPSESRVSEVPSES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000801 [exp]	0	1
AT5G57820			zinc ion binding (.1)		Lus10007703 [exp]	7.7	0.7481
AT1G67623			F-box family protein (.1)		Lus10030790 [exp]	13.2	0.7316
AT1G33530			F-box family protein (.1)		Lus10014984 [exp]	17.9	0.7287
					Lus10009804 [exp]	21.2	0.6766
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10040339 [exp]	21.5	0.6845
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	21.8	0.7108
					Lus10009425 [exp]	25.7	0.6639
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	28.5	0.6863
					Lus10043281 [exp]	28.5	0.6768
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	30.8	0.6583

Compare expression of checked genes

Lus10000801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.