Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45130 1047 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G36360 1030 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 921 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G26140 884 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 868 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 851 / 0 BGAL4 beta-galactosidase 4 (.1) AT2G28470 790 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 716 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 713 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 676 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024292 [exp] 1322 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10025980 [exp] 1044 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 1041 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 945 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10037644 [exp] 919 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 919 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 914 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10006009 [exp] 882 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 867 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232600 [exp] 1113 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 1058 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 1025 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 935 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 929 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 925 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 767 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 763 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.011G044300 [exp] 724 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 720 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10000803 pacid=23175266 polypeptide=Lus10000803 locus=Lus10000803.g ID=Lus10000803.BGIv1.0 annot-version=v1.0 ATGGGAACTACCTCAGTTCCCAAGCAGCTGTATTTCTTCTTCTTTTTCCTCTGTTTGTTGAAGCTAGCAGAATGCACTGTGACCTATGACAATAAGGCCA TTCTCATCAATGGCCAGAGGAGACTCCTCCTCTCCGGCTCCATTCACTATCCCAGAAGCACCCCTCAAATGTGGGAAGATCTCATTCAGAAGGCCAAAGA TGGAGGCTTGGATTGTATTGACACTTATGTTTTCTGGAATGTACATGAGCCTTCCCCTGGAAATTATGATTTTGAAGGAAGATACGACCTTGTAAGGTTT ATTAAGACGATTCAGAAAAATGGGCTTTATGTTCATCTCCGCATTGGACCTTATATTTGTGCTGAATGGAATTTTGGAGGATTTCCCGTCTGGTTGAAGA ATGTCGATGGCATGAGCTTCAGAACAGATAACCAGCCTTTCAAGATGATGAAGAATGAGAAACTCTTTGCATCACAAGGTGGTCCCATCATTCTTTCTCA GATTGAGAATGAGTATGGACCAGAGAGTAAGGCATTTGGGGCAGCTGGTAAGTCTTACATTAACTGGGCAGCAACAATGGCTGTTGAGTTAGACACTGGA ATTCCATGGGTGATGTGCAAAGAAGATGATGCTCCTGACCCTGTGATAAATACATGCAACGGTTTCTACTGTGACACCTTTACTCCCAACAAGCCTTATA AACCGGGACTCTGGACAGAGGCATGGAGTGGCTGGTTCACGGAGTTTGGAGGTCCGAATCAGCATAGACCAGTTGAAGATTTGGCATTTGGAGTTGCTCG TTTCATACAAAAGGGTGGCACATTCGTTAATTACTACATGTATCATGGAGGCACAAACTTCGGTCGATCAGCTGGAGGCCCCTTTATCACTACTAGTTAT GACTATGATGCTCCAATTGATGAGTATGGCTTGATTAGGGAACCTAAATACAGCCATCTGAAAGAACTTCACAAAGCTATTAAATTGTGTGAGCCAGCTG TGGTCTCCTCTGATCCAACAGTAACTCCACTGGGAACTTACCAACAGGGACATTGTGCAGCTTTCCTAACCAACTATCATCCAAACCATACTGCTAAGGT GACTTACAACCATTTGCACTATGATTTACCTCCCTGGTCCACCAGCATCCTCCCCGATTGCCGAACTGTAGTCTACAACACTGCAAAGGTTGGACTTCAG CCATCACATGTCCAGATGTTGCCAACCGTTCGCGGACTCTTGGAGCAGATCAATGTCACTAGAGATAATAGTGACTATTTGTGGTACATTACCAGTGTCC GGATTGGATCATCTGAATCATTTCTCCACGGTGGACCTAAGCCAACACTCAGTGTGCAGTCAGCAGGCCATGCCCTCCATGTTTTCATCAATGGACAGTA TTCTGGATCTGCATTTGGGACCAGAGAAGACAGAAGATTGACCTTCAGAGGACCGGTCAACTTGCGTCATGGGGCAAACAAGATTGCATTGCTCAGCGTA GCGGTTGGATTGCCGAATGTAGGATTCCGGTTTGAGACATGGAAGACAGGAATTGAAGGACCTGTTATGTTACATGGACTTAAAAAAGGGGACAGAGACT TGACACACCACAAATGGTCTTACCAGGTTGGCTTACGAGGAGAGGCGTTGAATTTGGTCTCTCCAGCCGGAGTCTCATCTGTTGAGTGGGCTGAAGATTC TCTAGCTGCACGAGGAAACCAAGCTTTGAAATGGCACAAGGCTTACTTTGATGCACCTGGAGGAAGTGAGCCACTGGGTCTGGACTTGGGGAGCATGGGG AAAGGGCAAGCGTGGATAAACGGGCAAAGCATAGGGAGATATTGGATGGCTTATGCAAAAGGTGAATGCAGTAATGGCTGCAATTACGCTGGGACATACC GCCCCAACAGGTGCCAACTGGGTTGTGGCCAACCAACCCAGCGATGGTATCATGTTCCAAGGTCATGGCTGAAGCCGAGGCAAAATTTGCTCATAGTTTT AGAGGAACTTGGAGGCGACGCATCAAAGATATCTCTTGTTAAGAGAATGTAG
AA sequence Show only first row Show all	>Lus10000803 pacid=23175266 polypeptide=Lus10000803 locus=Lus10000803.g ID=Lus10000803.BGIv1.0 annot-version=v1.0 MGTTSVPKQLYFFFFFLCLLKLAECTVTYDNKAILINGQRRLLLSGSIHYPRSTPQMWEDLIQKAKDGGLDCIDTYVFWNVHEPSPGNYDFEGRYDLVRF IKTIQKNGLYVHLRIGPYICAEWNFGGFPVWLKNVDGMSFRTDNQPFKMMKNEKLFASQGGPIILSQIENEYGPESKAFGAAGKSYINWAATMAVELDTG IPWVMCKEDDAPDPVINTCNGFYCDTFTPNKPYKPGLWTEAWSGWFTEFGGPNQHRPVEDLAFGVARFIQKGGTFVNYYMYHGGTNFGRSAGGPFITTSY DYDAPIDEYGLIREPKYSHLKELHKAIKLCEPAVVSSDPTVTPLGTYQQGHCAAFLTNYHPNHTAKVTYNHLHYDLPPWSTSILPDCRTVVYNTAKVGLQ PSHVQMLPTVRGLLEQINVTRDNSDYLWYITSVRIGSSESFLHGGPKPTLSVQSAGHALHVFINGQYSGSAFGTREDRRLTFRGPVNLRHGANKIALLSV AVGLPNVGFRFETWKTGIEGPVMLHGLKKGDRDLTHHKWSYQVGLRGEALNLVSPAGVSSVEWAEDSLAARGNQALKWHKAYFDAPGGSEPLGLDLGSMG KGQAWINGQSIGRYWMAYAKGECSNGCNYAGTYRPNRCQLGCGQPTQRWYHVPRSWLKPRQNLLIVLEELGGDASKISLVKRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10000803 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	3.9	0.8644
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	5.1	0.8457
AT3G58640			Mitogen activated protein kina...		Lus10029833 [exp]	5.5	0.8452
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	7.1	0.8305
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10036747 [exp]	7.7	0.8309
AT1G74160			unknown protein		Lus10034677 [exp]	8.8	0.8122
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	10.7	0.8229
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	13.0	0.8218
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	19.4	0.8057
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	21.9	0.8056

Compare expression of checked genes

Lus10000803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.