Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21350 120 / 3e-33 PUB8, B80 plant U-box 8 (.1) AT3G01400 47 / 1e-06 ARM repeat superfamily protein (.1) AT5G58680 44 / 2e-05 ARM repeat superfamily protein (.1) AT3G54790 39 / 0.0007 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020077 [exp] 195 / 5e-62 AT4G21350 413 / 6e-144 plant U-box 8 (.1) Lus10006747 [exp] 192 / 8e-61 AT4G21350 405 / 6e-141 plant U-box 8 (.1) Lus10007738 [exp] 45 / 6e-06 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10012260 [exp] 45 / 7e-06 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10018684 [exp] 45 / 7e-06 AT3G01400 358 / 2e-124 ARM repeat superfamily protein (.1) Lus10016016 [exp] 44 / 2e-05 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10019308 [exp] 40 / 0.0003 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 40 / 0.0003 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028800 [exp] 129 / 2e-36 AT4G21350 379 / 8e-131 plant U-box 8 (.1) Potri.011G033300 [exp] 117 / 4e-32 AT4G21350 405 / 7e-141 plant U-box 8 (.1) Potri.014G016400 [exp] 45 / 8e-06 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 40 / 0.0003 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000804 pacid=23175267 polypeptide=Lus10000804 locus=Lus10000804.g ID=Lus10000804.BGIv1.0 annot-version=v1.0 ATGCTCACAAAATCCTCCCCTTCCCTCTGCCGCCCCGTCACCAAATTCGGCGCCATTTCCTCCATTCTCTACTGCGTCGATTCCTCAATTTCCCCGCCTA TCCTTGAAAAGGCCCTCTCTTTACTCCTAAACCTCTCTTTAGACGATGATAGCAAGGTGGGTTTGGTTGTGGAAGGGGCAATCGGTAGAGTAATTAGAGT TTCGCAGTCTGGTACGCCCGATTGCAGAGTGATCGGTTGTACGATTCTCACAAGCTTGGCTGTCGTAGAGGTGAATAAGGCGACGATCAAGGACTATCCC AACGCGATTCAATCACTGGTGAATTTGTTGGAGGTCGGGAAAGGGAGGGAGATTAAAGAAGGGGTGGCTGTGTTGTACGCGATCTGTTCATTTCCGGAAA CCGGAGGAAAGCGGTGGAGTGCGGCTCGGTTCTTATTTTGGTCCGGTTGGTTTATAACGGGATGGAAAGAGTTGTGA
AA sequence Show only first row Show all	>Lus10000804 pacid=23175267 polypeptide=Lus10000804 locus=Lus10000804.g ID=Lus10000804.BGIv1.0 annot-version=v1.0 MLTKSSPSLCRPVTKFGAISSILYCVDSSISPPILEKALSLLLNLSLDDDSKVGLVVEGAIGRVIRVSQSGTPDCRVIGCTILTSLAVVEVNKATIKDYP NAIQSLVNLLEVGKGREIKEGVAVLYAICSFPETGGKRWSAARFLFWSGWFITGWKEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10000804 [exp]	0	1
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	2.6	0.8527
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10012963 [exp]	4.5	0.7492
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	5.7	0.8079
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10030422 [exp]	7.1	0.7955
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10043300 [exp]	7.7	0.7776
AT1G57680			unknown protein		Lus10028891 [exp]	8.7	0.7593
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10007921 [exp]	9.4	0.7726
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	10.5	0.7778
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	15.0	0.7914
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	17.3	0.7742

Compare expression of checked genes

Lus10000804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.