Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00710 599 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G41260 595 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G63500 578 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 548 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 535 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 521 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 468 / 2e-162 BSK1 BR-signaling kinase 1 (.1) AT5G46570 450 / 1e-155 BSK2 BR-signaling kinase 2 (.1) AT5G01060 439 / 2e-151 Protein kinase protein with tetratricopeptide repeat domain (.1) AT3G09240 436 / 2e-150 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018849 [exp] 831 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1) Lus10037856 [exp] 662 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10030383 [exp] 659 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10008530 [exp] 579 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 579 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10027743 [exp] 578 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 575 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 573 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 528 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158400 [exp] 644 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.014G082400 [exp] 636 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.003G126700 [exp] 571 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G104700 [exp] 569 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.006G093900 [exp] 568 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 558 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 539 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 534 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.004G182800 [exp] 472 / 4e-164 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 471 / 5e-164 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10000806 pacid=23175375 polypeptide=Lus10000806 locus=Lus10000806.g ID=Lus10000806.BGIv1.0 annot-version=v1.0 ATGGGAAGCCAGTGTTCCAAGATTGGCGTGCTGCCATGTTGCATTGATTCAAAGGTGAAAGCAGCGGTTCTTGAAGTTTCTCCTCTTGCTGGGAATTTAG ATGAGAAAGGGGATGATGGATATAATAATGTGGCTGAATTTAGAGAGTACACACTAGAGCAATTGAAGAATGCCACCTCTGGTTTTGCGAGTGAGAACAT TGTATCTGAACATGGAGAGAACGCTCCCAACCTCGTTTTCAAAGGAAAGCTCGAAAACCAGTCCAAAATTGCTGTCAAGCGCTTCAATACCATAGCCTGG CCTGATGCTCTCCAATTTGTGGAGGAAGCAAGATTAGTTGCGAAGCTCCGTAGCCATAGGCTGGCAAATCTGATTGGTTATTGTTGTCAAGATGATGAAA GGATGCTGGTTGCAGAATTCATGCCTAACGCTACTCTAGCAAACCATCTTTTCCATTGGGAAATTCAGCCTATGAAGTGGGGAATGCGATTGAGGGTTGT TCTGCAACTTGCACAAGCTCTTCAGTATTGTAGAAACAAAGGGCGCACACTCTATCATGATCTTAACGCCTATAGAATTTTGTTTGATGAGGATGCTAAC CCAAGACTATCAACCTTTGGTTTGATGAAGAATAGTCGGGATGGGAAGAGTTACAGTACTAATCTGGCATTTACTCCTCCTGAATATCTCAGAACGGGGA GGATAGTGCCAGAGAGTTTAATATATAGCTTTGGAACTCTCTTAGTTGACCTTCTCAGCGGAAAGCATATCCCTCCGAACCATGCTCTTGACCTGATACG AGACAGAAATCTTCAAATGTTGACTGATTCTGGCTTGGAAGGGCACTTCTCCAGTGATGACGTTCCTTCTCATGTGTTGATGGGTATCCCGAGTAGCGAA TCGCTCACTCGTTTAACCCCATTTGGGGATGCTTGCTCCATGAAGGATCTAACAATTAAGCTTGGCTACAAAGATGACCAAGCAGTGACAAATGAGCTCT CATTCCAGCTGTGGACTGATGAAATGCAAGAAACTCTAAACACAAAAAAGAAGGGAGATGCTGCCTTTAAGCACAACAACTTTAAGGAAGCTATTCACTG CTATACACAGTTCATTGTTGCCGGAATGATGGTTTCTCCAACGGTTCATGCCCGTCGGAGTCTGTCTTATCTCATGATCGGTGGACAACAACAACAACAA GAAGCTCTTAGAGATGCGATGCAAGCACAAGCGATTTCCCCTGTATGGCATGTTGCTTCATATCTTCAATGTGTTGCACTTTATGCACTGGGGAGACAAA ATGAAGCTTACATGGCACTTAAAGAGGCCACCACTCTTGAATCCGAGATCATGAGTTGA
AA sequence Show only first row Show all	>Lus10000806 pacid=23175375 polypeptide=Lus10000806 locus=Lus10000806.g ID=Lus10000806.BGIv1.0 annot-version=v1.0 MGSQCSKIGVLPCCIDSKVKAAVLEVSPLAGNLDEKGDDGYNNVAEFREYTLEQLKNATSGFASENIVSEHGENAPNLVFKGKLENQSKIAVKRFNTIAW PDALQFVEEARLVAKLRSHRLANLIGYCCQDDERMLVAEFMPNATLANHLFHWEIQPMKWGMRLRVVLQLAQALQYCRNKGRTLYHDLNAYRILFDEDAN PRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRIVPESLIYSFGTLLVDLLSGKHIPPNHALDLIRDRNLQMLTDSGLEGHFSSDDVPSHVLMGIPSSE SLTRLTPFGDACSMKDLTIKLGYKDDQAVTNELSFQLWTDEMQETLNTKKKGDAAFKHNNFKEAIHCYTQFIVAGMMVSPTVHARRSLSYLMIGGQQQQQ EALRDAMQAQAISPVWHVASYLQCVALYALGRQNEAYMALKEATTLESEIMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	0	1
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	1.7	0.7966
AT5G06440			unknown protein		Lus10013601 [exp]	1.7	0.7352
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	2.0	0.7815
					Lus10000810 [exp]	3.7	0.7188
					Lus10004560 [exp]	5.3	0.7295
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	7.2	0.6828
					Lus10040651 [exp]	9.4	0.6932
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	13.0	0.6462
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	14.1	0.7203
AT3G16560			Protein phosphatase 2C family ...		Lus10008378 [exp]	16.4	0.7007

Compare expression of checked genes

Lus10000806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.