Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01260 77 / 6e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 73 / 6e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 71 / 9e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 70 / 1e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT5G28040 67 / 1e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G66420 66 / 3e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT3G04930 66 / 5e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2) AT4G00250 64 / 2e-11 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00610 62 / 9e-11 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 62 / 1e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004772 [exp] 113 / 1e-28 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 103 / 4e-26 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 103 / 3e-25 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 88 / 3e-20 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 84 / 3e-18 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 75 / 4e-15 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 75 / 6e-15 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 70 / 3e-13 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10017793 [exp] 54 / 2e-08 AT1G66420 72 / 6e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293900 [exp] 96 / 2e-22 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 95 / 3e-22 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 72 / 3e-14 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 69 / 5e-13 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 59 / 1e-09 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 47 / 1e-05 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10000807 pacid=23175379 polypeptide=Lus10000807 locus=Lus10000807.g ID=Lus10000807.BGIv1.0 annot-version=v1.0 ATGGCTCCCCAACACCCTGAAGAAGAAGAGATATCAGCTGCCTCCAACAAGCCTGTTGACAAGTCCCATTCCGAGGGCTCTGATTCGGACGATCATTCCA ATTCAGCCTCAGAAGAACAAGACTTAGCTCCTCCCTCCAACAAGCCACTCAATGCTGAATCTGAAGCAGAAGAATCACCTACAGGCCCAAAGATTAATAA TGTGACTGCTCCGACCGAAACACCAAAGAATGTGACTCCTCCTCCGGCAAGGAAGAAGAGGGGCAACGAAGAAACTGAAGGTGAAGAAGGTAATAAAGCA AAGCGAGGACGGAATGAACAAGTTGCTGTTGATGTTCAGAAATCTGCACAATCTACAAGCAACCATCTCTTTCAGAAAATATGGAGCGATGATGATGAGA TTAAGTTGTTACAAGGACTCGTCATCAAGTATTCCCGAAAGGGAAATGGAGTTGACCCGGCTGAAATGCAAATACACTGGTCTGATTTCTATAATTCCAT CAAGCCATGTATTAGCTTTGATGTCAATCTTTCTCAGGTCAAAGATAAAGTTAGGAAACTGAAGGCCAAGTTCCTGAACCACTTCAACAAAGGAACTGGT GAAGGTACGAGATTCACTGAACCTCATCATCAACTGTGTTCTGATTTGTCAATGATGATTTGGGGATCTAGCAATGCAAAGACGACAACACTGAGGCCAC GAAGAAACATCAACAACAATGAAGAGGTTAGTTGCAGAGTGCCCCTGAGAATGGACAAGAAATGGAACAACTTTTATGCGGCTAGTTTTGAGCTTATGAT TAAGAGGTATGCCTTGTTGATTGACGAAGCCAATTTAATGCGGGCTTCCATGGACGAAGATGATTAG
AA sequence Show only first row Show all	>Lus10000807 pacid=23175379 polypeptide=Lus10000807 locus=Lus10000807.g ID=Lus10000807.BGIv1.0 annot-version=v1.0 MAPQHPEEEEISAASNKPVDKSHSEGSDSDDHSNSASEEQDLAPPSNKPLNAESEAEESPTGPKINNVTAPTETPKNVTPPPARKKRGNEETEGEEGNKA KRGRNEQVAVDVQKSAQSTSNHLFQKIWSDDDEIKLLQGLVIKYSRKGNGVDPAEMQIHWSDFYNSIKPCISFDVNLSQVKDKVRKLKAKFLNHFNKGTG EGTRFTEPHHQLCSDLSMMIWGSSNAKTTTLRPRRNINNNEEVSCRVPLRMDKKWNNFYAASFELMIKRYALLIDEANLMRASMDEDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10000807 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	3.5	0.8973
					Lus10011047 [exp]	3.6	0.9094
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10004233 [exp]	5.2	0.8984
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	6.7	0.8858
					Lus10033476 [exp]	11.0	0.8714
					Lus10024084 [exp]	11.5	0.9042
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	17.9	0.8628
					Lus10041394 [exp]	19.6	0.8806
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	20.0	0.8643
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	21.0	0.8571

Compare expression of checked genes

Lus10000807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.