Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00740 931 / 0 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 481 / 2e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 477 / 7e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 464 / 2e-157 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G26850 460 / 1e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G00750 459 / 6e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 456 / 4e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 455 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 444 / 4e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 431 / 3e-144 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041363 [exp] 883 / 0 AT4G00740 830 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018848 [exp] 874 / 0 AT4G00740 751 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 465 / 4e-157 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 464 / 5e-157 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 463 / 2e-156 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 462 / 3e-156 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10005764 [exp] 461 / 1e-155 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012830 [exp] 459 / 3e-155 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10034729 [exp] 454 / 3e-153 AT1G31850 991 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075300 [exp] 962 / 0 AT4G00740 965 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 481 / 2e-163 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 470 / 3e-159 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 468 / 2e-158 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 465 / 2e-157 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 466 / 3e-157 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 463 / 8e-157 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 461 / 4e-156 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 456 / 9e-154 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G131400 [exp] 453 / 5e-153 AT1G31850 1026 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000808 pacid=23175378 polypeptide=Lus10000808 locus=Lus10000808.g ID=Lus10000808.BGIv1.0 annot-version=v1.0 ATGGGGAACCTGAACCTCCCTTCCAAGCGAAACCCTAAGCAATGGAAGCTTCTCGACCTCGTGTCCGCCGCATTCTTCGGGTTAGTCATCCTATTCCTCT TCCTAGTCTTCACCCCACTCGGCGACTCCATCGCCGCCTCCGGCAGGCAGGCTCTTCTCCTCTCCACTTCGGATCCGAGGCAGCGCCACCGCCTCATCGA ACTTATCGAGACTGGCCACCATCCTCAGCCGATTGAGCCCTGCTCCTCTGAGGAAGTAGATCACATGCCTTGCGAGGATCCCCGCCGGAATAGTCAGCTC AGTAGAGATATGAATTTCTATAGGGAGCGTCACTGCCCGCTACCGGACGATACTCCTCTTTGCCTCATCCCTCCCCCTAATGGTTACAGAGTTCCTGTTA GATGGCCGGATAGCTTGCGCAAGATATGGCATGCAAACATGCCACACAACAAAATTGCTGAAAGGAAAGGCCATCAAGGATGGATGAAAGAGGACGGTGA ATATTTTATTTTCCCTGGTGGTGGTACCATGTTCCCAGAAGGTGCCATACCTTACATAGAGAAACTTGCTCAGTATATCCCTATACGAAATGGAGTACTA AGGACTGCCCTTGACATGGGATGTGGGGTTGCTAGCTGGGGAGGATATCTGATGAAAGAAGGAATTATACCACTCTCTTTTGCTCCAAGAGATTCCCACA AATCTCAGATACAGTTTGCGCTTGAAAGAGGAATTCCGGCATTTGTTGCTATGCTTGGAACTCGGAGGCTTCCATTCCCTGCATTCTCCTTTGACTTGGT TCACTGTTCTAGATGTTTAATCCCTTTCACTGCTTACAATGCAACTTATTTCATTGAAGTGGATCGCTTACTTCGCCCGGGAGGATATTTAGTCATATCT GGTCCACCTGTACAGTGGGCTAAACAAGATAAGGAATGTAAACAAGATAAGGAATGGGCTGATCTTCAGGGTGTTGCAAGAGCACTTTGTTATGAGCTAA TTGCTGTTGATGGGAACACTGTCATATGGAAAAAGCCTTCTGGTGGTTCGTGCCTGCCTAATCACAATGAATTTGGCCTTCAGTTGTGTGGCGAATCAGT TGATGTAAGCTCTGCGTGGTACTTTAAGTTGGAGAAATGTGTGACCCCTCAATCTTCAGTCAAGGGGAAGTGTGCTGTTGGTATGATTCCAACATGGCCA GATAGATTAAACAAGCCACCTGCAAGGGCTGCTCTTATAAAGAGCGGCATCGAATTATTTGAGGCAGACACTCGTCGCTGGGCTAGGAGGGTTGCATATT ACAGGAATTCTCTGAATGTGAAGCTGGGAACTCCTGCAATACGCAATGTGATGGATATGAATGCATTTTTTGGAGGCTTTGCTGCAGCTTTAGGATCTGA TCCTGTGTGGGTGATGAATGTTGTTCCTGCTCGCAAACCTTCAACTTTGGATGTTATCTTTGACAGAGGGCTTATAGGCGTTTACCATGATTGGTGCGAA CCCTTCTCAACATATCCGCGTAGTTATGATCTAATCCATGTATCTGGAATCGATTCGTTGGTAAAAGCTCCTGGTTCTGGCCAAAACAGGTGCAGCCTAG TGGATGTAATGGTAGAGATGGACAGAATACTGAGGCCAGAAGGAACAGTGGTGATTAGGGACTCACCAGAGGTTATAGATAGAGTGGCTCGCATAGCTAA CAGTGTAAGATGGAAAGCTAGCATACATGAGAAAGAAGAGGAGTCACATGGCTCCCAAATCATACTCGTTGCTACCAAGAATTTATGGACACTTGCTTTA GCATCTCACTGA
AA sequence Show only first row Show all	>Lus10000808 pacid=23175378 polypeptide=Lus10000808 locus=Lus10000808.g ID=Lus10000808.BGIv1.0 annot-version=v1.0 MGNLNLPSKRNPKQWKLLDLVSAAFFGLVILFLFLVFTPLGDSIAASGRQALLLSTSDPRQRHRLIELIETGHHPQPIEPCSSEEVDHMPCEDPRRNSQL SRDMNFYRERHCPLPDDTPLCLIPPPNGYRVPVRWPDSLRKIWHANMPHNKIAERKGHQGWMKEDGEYFIFPGGGTMFPEGAIPYIEKLAQYIPIRNGVL RTALDMGCGVASWGGYLMKEGIIPLSFAPRDSHKSQIQFALERGIPAFVAMLGTRRLPFPAFSFDLVHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVIS GPPVQWAKQDKECKQDKEWADLQGVARALCYELIAVDGNTVIWKKPSGGSCLPNHNEFGLQLCGESVDVSSAWYFKLEKCVTPQSSVKGKCAVGMIPTWP DRLNKPPARAALIKSGIELFEADTRRWARRVAYYRNSLNVKLGTPAIRNVMDMNAFFGGFAAALGSDPVWVMNVVPARKPSTLDVIFDRGLIGVYHDWCE PFSTYPRSYDLIHVSGIDSLVKAPGSGQNRCSLVDVMVEMDRILRPEGTVVIRDSPEVIDRVARIANSVRWKASIHEKEEESHGSQIILVATKNLWTLAL ASH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	0	1
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	2.0	0.9343
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011089 [exp]	2.4	0.9030
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	3.0	0.9217
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	4.9	0.9086
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	5.0	0.9050
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	5.3	0.9256
AT4G26455		WIP1	WPP domain interacting protein...		Lus10008336 [exp]	6.9	0.8791
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	7.5	0.8992
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	8.4	0.8916
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	8.5	0.8991

Compare expression of checked genes

Lus10000808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.