Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61200 112 / 1e-30 Thioesterase superfamily protein (.1) AT1G04290 63 / 3e-12 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018847 [exp] 261 / 5e-89 AT3G61200 149 / 4e-46 Thioesterase superfamily protein (.1) Lus10019228 [exp] 66 / 5e-13 AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1) Lus10004288 [exp] 65 / 9e-13 AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155500 [exp] 148 / 2e-44 AT3G61200 139 / 4e-42 Thioesterase superfamily protein (.1) Potri.014G078900 [exp] 137 / 4e-40 AT3G61200 160 / 2e-50 Thioesterase superfamily protein (.1) Potri.004G134066 [exp] 62 / 5e-12 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.004G134132 [exp] 56 / 1e-09 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10000809 pacid=23175376 polypeptide=Lus10000809 locus=Lus10000809.g ID=Lus10000809.BGIv1.0 annot-version=v1.0 ATGTCCAATGACGGCAGCGGAGGAACTGACGGAGAGGGATCGACGGTGATCAGAGACGTCCCTCTCCAATACGCCAACACGGTTAGAAACTTCTTCACAA GCACTGGAGTCTCCGATCCTTCGGTGAAAAAGTACACCTCCACCAAAGACTCCTACTCCGATATCATCACCGGCCTCCTAAAGGTCCACGCCGTCGAACG CGGCCGGGTCTCTTGCTCCTTCTCCGTCCTTCCCCTCGTCGCCAATTTTTACAAAGGTCTACACGGAGGAGCAGCGGCCGCAGTAGCGGAGAGGATATCG ATTGCGTGTGCTAGAACCCTAGTGGCGGAGGAGAAGGAACTGTTTCTAGGTGAATTGGGGATCTCTTACCTATCAGCTGCCCCTGAAAATGAGACGCTGA CGGTTGAGGCTAATGTGGTGAGGAGCGGAAGGAACTTGACGGTGGTTTCAATGGAGTTCCGGCAGAAGAAAACCGGGAAGCTAATATTGGTTAATGTGGT GAGGAGCGGAAGGAACTTGACGGTGGTTTCAATGGAGTTCCGGCAGAAGAAAACCGGGAAGCTAATATTGGTTAATGTGGTGAGGAGCGGAAGGAACTTG ACGGTGGTTTCAATGGAGTTCCGGCAGAAGAAAACCGGGAAGCTAATATTGGTTAATGTGGTGAGGAGCGGAAGGAACTTGACGGTGGTTTCAATGGAGT TCCGGCAGAAGAAAACCGGGAAGCTAATGTATACTGCTCGCTCAACCTTCTATCACCTCACTGCTTCCAAGCTATAG
AA sequence Show only first row Show all	>Lus10000809 pacid=23175376 polypeptide=Lus10000809 locus=Lus10000809.g ID=Lus10000809.BGIv1.0 annot-version=v1.0 MSNDGSGGTDGEGSTVIRDVPLQYANTVRNFFTSTGVSDPSVKKYTSTKDSYSDIITGLLKVHAVERGRVSCSFSVLPLVANFYKGLHGGAAAAVAERIS IACARTLVAEEKELFLGELGISYLSAAPENETLTVEANVVRSGRNLTVVSMEFRQKKTGKLILVNVVRSGRNLTVVSMEFRQKKTGKLILVNVVRSGRNL TVVSMEFRQKKTGKLILVNVVRSGRNLTVVSMEFRQKKTGKLMYTARSTFYHLTASKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	0	1
					Lus10033310 [exp]	1.4	0.9217
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	1.4	0.9164
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	2.2	0.8897
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	3.9	0.8984
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	4.7	0.8802
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	5.3	0.8757
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	6.5	0.8887
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10041133 [exp]	6.6	0.8663
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	6.9	0.8900
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10016546 [exp]	8.5	0.8708

Compare expression of checked genes

Lus10000809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.