Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000810 [exp] 182 / 3e-56 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111100 [exp] 436 / 6e-151 ND / Potri.008G130950 [exp] 229 / 2e-72 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10000811 pacid=23162248 polypeptide=Lus10000811 locus=Lus10000811.g ID=Lus10000811.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTCCAAATCTCATTTCCCAGCCATGGACGACGCCGGTTTCTGATCTCGATGTTTACGGCAGAAGAAACGGCGCCCTTTCAGGAGGATACT TGTTATTCTCCATTACAGAGAGAAGAAGAAGAAGAAGAAGATCAAAGGGTTTGAAGATCATCACTCTTTCTGCTGACGACCCATCTTACAGTTCGGGTCG GAAGAAGAAGAAATGCGGTGACTCGATCTCTGATGAGAAAAAGAAGCGACCTTTATGGAAGAAGATTGTGTTTTCTTCTAAGAAGTTAAGGAGTGTATTG CTGCTGAATGTTGTCGCTGTTGTCTACGCAAGCGACTTCTCGGTGGTGAAAGCAGTTGAGACAACAACGGATCCTGCTGCCTTTTCAACTGTGAGGTTCA TATTGTCTGCGATTCCATTTCTACCTTTGGTGCTTCGTTCAAGAGGTGATATCGGGACACGTAATGCAGGTCTCGAGCTGGGTTTATGGGCTAGTCTAGG TTACCTTATTGAAGCACTTAGTCTACTTACTGCTGATGCTGGCCGTGCTTCATTTATATCTTTGTTTACGGTTATTGTTGTGCCCTTGGTTGATGGCATG TTAGGGGCGAATGTCCCTGCTCGTACTTGGTTTGGAGCTCTGATGTCTGTCCTTGGGGTGGCTATGTTGGAAAGCAGTGGTTCTCCTCCTAATGTTGGAG ATCTTTTGAGCTTTCTGAGTGCTATCTTTTTCGGAATTCATATGCTGCGGACTGAACATTTTTCGAGGATAACGGAGAAAGAGGACTTGCTGACCCTTGT TGGATATGAGGTATGTGTTGTGGCTCTGTCATCCTTAATTTGGTTGGTAATTGGAGGATTTCTTGATGGTGACCAAGAGCTTAGCCAATCATCATTATTG ACCTGGCCGATGAAGTGGGATTGGGTTGCTTCATTTCCATGGACCTCAGCTCTTTATAGTGGTGTATTTTCTACAGGATTGTGCTTGTGGGCAGAGATGG GTGCAATGCGCAATGTATCAGCAACGCAAACAGCTGTGATTTACGGGCTGGAGCCAGTTTGGGGAGCTGGATTTGCTTGGTTGCTACTTGGAGAGAGGTG GGGAACTGCAGGATGGATTGGCGCTGCTCTTGTTCTTGGTGGGAGCTTGATGGTACAGGTGGTTGGAGATACAACTTCAAGTGAATCAATCAAGAAAAGC TCAAATGAAAATAAACCAGCTGGTCTGGTTTTGATATCTGAGAGGCAAAAACTGCCGAGAAACCTCACTGCTGCATCTGTCATTGTAAGGTCGAGCAAGG ATGTAACTGATAGACTCAAGTGA
AA sequence Show only first row Show all	>Lus10000811 pacid=23162248 polypeptide=Lus10000811 locus=Lus10000811.g ID=Lus10000811.BGIv1.0 annot-version=v1.0 MAAAPNLISQPWTTPVSDLDVYGRRNGALSGGYLLFSITERRRRRRRSKGLKIITLSADDPSYSSGRKKKKCGDSISDEKKKRPLWKKIVFSSKKLRSVL LLNVVAVVYASDFSVVKAVETTTDPAAFSTVRFILSAIPFLPLVLRSRGDIGTRNAGLELGLWASLGYLIEALSLLTADAGRASFISLFTVIVVPLVDGM LGANVPARTWFGALMSVLGVAMLESSGSPPNVGDLLSFLSAIFFGIHMLRTEHFSRITEKEDLLTLVGYEVCVVALSSLIWLVIGGFLDGDQELSQSSLL TWPMKWDWVASFPWTSALYSGVFSTGLCLWAEMGAMRNVSATQTAVIYGLEPVWGAGFAWLLLGERWGTAGWIGAALVLGGSLMVQVVGDTTSSESIKKS SNENKPAGLVLISERQKLPRNLTAASVIVRSSKDVTDRLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000811 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	3.2	0.8820
					Lus10000810 [exp]	7.0	0.7516
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	7.2	0.8705
AT5G63010			Transducin/WD40 repeat-like su...		Lus10027338 [exp]	8.4	0.7355
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	8.8	0.8113
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026375 [exp]	12.8	0.7578
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10014917 [exp]	14.3	0.7649
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	14.6	0.8388
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	15.6	0.7967
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10003997 [exp]	19.2	0.7241

Compare expression of checked genes

Lus10000811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.