Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04350 761 / 0 Plant protein of unknown function (DUF946) (.1) AT5G18490 731 / 0 Plant protein of unknown function (DUF946) (.1) AT1G04090 649 / 0 Plant protein of unknown function (DUF946) (.1) AT5G43950 641 / 0 Plant protein of unknown function (DUF946) (.1) AT2G44230 490 / 1e-168 Plant protein of unknown function (DUF946) (.1) AT2G44260 488 / 9e-168 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT3G01880 429 / 4e-144 Plant protein of unknown function (DUF946) (.1) AT3G01870 415 / 5e-139 Plant protein of unknown function (DUF946) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027952 [exp] 1130 / 0 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10024955 [exp] 658 / 0 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 653 / 0 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10017580 [exp] 464 / 2e-158 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017579 [exp] 462 / 1e-157 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10033542 [exp] 462 / 2e-156 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 449 / 4e-152 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10011036 [exp] 64 / 4e-10 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10003007 [exp] 64 / 4e-10 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048300 [exp] 801 / 0 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.014G193100 [exp] 663 / 0 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.001G232500 [exp] 529 / 0 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 527 / 0 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 521 / 0 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.002G256802 [exp] 200 / 2e-60 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1) Potri.001G148800 [exp] 53 / 6e-07 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Potri.008G100600 [exp] 45 / 0.0002 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [flax] [poplar] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Lus10000813 pacid=23181273 polypeptide=Lus10000813 locus=Lus10000813.g ID=Lus10000813.BGIv1.0 annot-version=v1.0 ATGATGATTGGGTGTGATTGCTTTTACTGGAACCAACAGTCCGTTGACTTTGACTTGCTGTCGGAGGAACATCCGCCGCCGCCGCCGCAGAGGTTCTCGT TGCCGGCTCCTCTTCCTCAATGGCCTCAAGGTGATGGATTTGGTAGTGGTGTGATGAACTTGGGAGAGATAGAGGTTGTCCAAGTGACCAAGTTTGAGAG TGCTTGGAGATGCATCCAATTGGGTGGGAAGGCACAGTTAGGAGCGTCATTTTACAAGCCTGTTGGGATCCCTGATGGTTTTTACTGCCTTGGTTACTAT TGCCACCCCAATGATAACCAGCCATTGAGAGGCAATGTTCTCGTGGCTCGTGAAAAAACCCAACCGAATTCAGATTCTCCAGCATTGAGCAAGCCGGTCA ACTATTCGCTGATATGGAGCACCGGCTCGCGCTACAGCGAAAACGGCTACTTCTGGCTGCCGAATCCACCAACAGGTTACAAGGCCATGGGCGTGGTGGT GACTCGTGACCCGAACGAGCCGGATGTGGAGGAAGTTAGGTGCGTTCGAGAAGACCTGACTGAGAGTTGTGAGACTTGGGATCTCGTGTTTTCGTTGGAT GGCAAAGGTTCTAACCAACCATTCCAGATTTGGAGCACTAAGCCTTGTAGGATGGGAATGTTTGGTCGAGGCGTTTCCGTTGGTACGTTTTACTGCCGGA GTAGCTTTATGAATTCGGAAGAAACTTTGGTCACTGTAGCGTGCTTGAAGAATATTGATGGCTCTTTAAGTGCAATGCCGAACTTGGACCAGATTCGTGC GCTGATTCAACACTATGGTCCTAAGATGTACTTCCACCCGGACGAGGATTACATGCCTTCGTCGGTGGAGTGGTTTTTCAAAAACGGAGCGCTTCTCTAT AAGGACGGGTTGGGGAAAGGCGAGTCGATTGACTATACAGGTTCGAACTTGCCAACTGGTGGCATAAATGATGGGGAGTATTGGATAGATTTGCCTGAAG ATGGTGATGCCAGGAACGATACTAAGAAAGGGAACTTGGAAAGTTCAGAGCTTTATGTCCATGTGAAACCGGCATTTGGAGGGTCCTTCACGGACATAGC AATGTGGGTGTTTTGTCCGTTCAACGGACCGGTTAACCTTAAGATAGGGCTCGTGAGTGTACAAATGTCGAGAATTGGTGAACATGTTGGCGACTGGGAG CACGTAACGCTTCGCATTAGCAACTTCACGGGAGAGCTATGGCAAGTGTTTTTCTCGGAGCACAGTGGAGGAAGATGGGTGGATGCTTGGGAAGTGGAGT TTGTTGAAGGTGGTAACAAGCCGATTGTCTATTCTTCGAAACACGGTCATGCTAGCTTTCCGCACGAGGGTATGTTTCTTCAAGGTGCGACGAAGCTAGG AATTGGAGTGAGGAATGATACCGCTCGAAGCGACTACTTCATCGATTCTAGTATAAGATATCGGCTGGTTGCAGCCGAGTATCTTGGGAAAGAAGTTGTT CCGGAGCCGAACTGGCTGCAATACATGAGAGAATGGGGTCCGACCATTGTCTATGATTCGCGATCTGAGGTTGACAAGATAATCAATCTTCTCCCTTTCT TCGTTCGTTTTTCGGTGGAGAATCTCTTTGACTTGTTCCCAACTGAGCTGTATGGAGAGGAGGGACCAACTGGACCGAAGGAGAAAGACAACTGGATCGG AGATGAGATATGCTAA
AA sequence Show only first row Show all	>Lus10000813 pacid=23181273 polypeptide=Lus10000813 locus=Lus10000813.g ID=Lus10000813.BGIv1.0 annot-version=v1.0 MMIGCDCFYWNQQSVDFDLLSEEHPPPPPQRFSLPAPLPQWPQGDGFGSGVMNLGEIEVVQVTKFESAWRCIQLGGKAQLGASFYKPVGIPDGFYCLGYY CHPNDNQPLRGNVLVAREKTQPNSDSPALSKPVNYSLIWSTGSRYSENGYFWLPNPPTGYKAMGVVVTRDPNEPDVEEVRCVREDLTESCETWDLVFSLD GKGSNQPFQIWSTKPCRMGMFGRGVSVGTFYCRSSFMNSEETLVTVACLKNIDGSLSAMPNLDQIRALIQHYGPKMYFHPDEDYMPSSVEWFFKNGALLY KDGLGKGESIDYTGSNLPTGGINDGEYWIDLPEDGDARNDTKKGNLESSELYVHVKPAFGGSFTDIAMWVFCPFNGPVNLKIGLVSVQMSRIGEHVGDWE HVTLRISNFTGELWQVFFSEHSGGRWVDAWEVEFVEGGNKPIVYSSKHGHASFPHEGMFLQGATKLGIGVRNDTARSDYFIDSSIRYRLVAAEYLGKEVV PEPNWLQYMREWGPTIVYDSRSEVDKIINLLPFFVRFSVENLFDLFPTELYGEEGPTGPKEKDNWIGDEIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	0	1
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	1.4	0.8689
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	4.2	0.8505
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	4.5	0.8508
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	5.2	0.8247
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10017451 [exp]	5.7	0.8258
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021943 [exp]	6.0	0.8343
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	7.5	0.8391
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	11.4	0.8179
AT5G02090			unknown protein		Lus10024357 [exp]	11.8	0.8349
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	14.1	0.8232

Compare expression of checked genes

Lus10000813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.