Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08590 1202 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 1177 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 760 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT3G49670 683 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 679 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 644 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 613 / 0 HSL1 HAESA-like 1 (.1) AT1G75820 607 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 601 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 569 / 0 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027951 [exp] 1849 / 0 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 1152 / 0 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10038930 [exp] 744 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 741 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10019248 [exp] 658 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 653 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 630 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 621 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 621 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021700 [exp] 1451 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 1443 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 1268 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G107600 [exp] 776 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 763 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.007G009200 [exp] 665 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 660 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 660 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 642 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 639 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000814 pacid=23181276 polypeptide=Lus10000814 locus=Lus10000814.g ID=Lus10000814.BGIv1.0 annot-version=v1.0 ATGGAAGCCAGCATGTTGATTTTCTTCATTGGCTGCTGCTTCTCTCTGGCTGTTTTAGCTAAGGGAGCTGTAGACAATGAGGTGTCAGCTCTTCTGGCGA TGAAATCAAGCCTTGTCGATTCTTCGAATCTGCTGGCTGATTGGACATTGGAAGGCAATAGTCACTGCAGGTGGACTGGGGTGAGCTGCAACTCTAGAGG GTTTGTGGAAAGACTGGACCTTTCCAATATGAATCTCACCGGGAGGATCTCAGATCGGATTCAGGAGCTGAAAGGTCTCGCCTTTCTCTCTGTTTCCAAC AATGGCTTCGCTTCTGCAATGCCGGAATCTCTAGGGAATCTTACTTCCTTGAAGACGGTTGATTTCAGCATGAACAACTTCATTGGGAGGTTCCCTACTG GACTAGGACTGGTTCCCGGGTTGACTTCGGTCAACGCTTCGAGCAACGACTTTTCGGGGGTTCTCCCTGAGGATCTTGGTAATGCGACATTGCTGGAAAG TCTGGACTTTCGAGGGAGTTTCTTCCAAGGTTCGATTCCTGGATCTTTCAGTAATTTGCAGAAGCTGAAGTTTCTTGGCCTTTCTGGTAATAACTTGACT GGTAAGTTACCAAAGGAGATCGGCAGGATGACTTCTTTGGAGACTATAATACTCGGTTACAACAATTTCGAAGGAGAGATTCCGTTGGAGATAGGAAATC TGACGAATCTTCGGTATCTCGATTTGGCTGTTGGCAGTATGGGAGGACAAATTCCTGCCGAATTGGGTAAGCTGAGAAAGCTCACCACTGTGTTTCTGTA CAGAAATAACTTCACCGGCAAGATCCCACCGGAACTCGGCAGCATTCAGACTCTTGTAATGCTCGATCTCTCCGATAACCAAATTTCAGGGGAGATACCA TTGGAGATTGCTGAGCTGAAGAATCTCGAGCTGTTGAACTTGATGCGCAACAATCTCACCGGTTCAATCCCCAGCCAGCTAGGCAACCTGACCAAATTAC AGGTACTCGAGCTTTGGAGGAACAACTTCGTAGGATCGTTGCCAACGAATCTCGGAAAGAACTCGCCGTTGCAGTGGCTGGACGTGTCATCTAATTTCCT CTCCGGTACGATTCCGACAAGTCTATGCGATTCAGGGAACCTCACCAAGCTGATCCTGTTCAAGAACTCATTCACAGGTTCGATCCCAACGAGCCTCTCG ACTACTTGCAAGTCACTGGTTCGTGTCAGGATGCAAGAGAATCTTCTCTCCGGGGCAATTCCTGTAGGGTTCGGAACCCTACCGTGGCTTCAGAGGCTGG AATTGGCTAACAACAACTTCACAGGCCAAATTCCGGACGATCTTTCTTTATCCACTTCTCTCAATTTCATCGATGTCTCTGGGAACCACCTCGAGTCCTC CCTCCCTTACAACATCCTTTCAATTCCTACCATTCAGACATTTGTGGCAGCCGGGAATAGCTTGCAGGGGAAGATACCAGCCCAGTTCCAGGACTGTCCG TCACTGTCAAGTCTCGATCTTTCCAACAACCATTTTACCGGAAGGCTTCCAGAGAGCATTGCTTCGTGCGAAAAGTTGGTGAATTTGAATCTGAGAAACA ACCAGTTCAGTGGAGGAATCCCAAATGCATTCTCCAGAATGCCAACTTTATCCATCCTTGACTTGTCTAACAATTCTCTAACCGGTCGAATTCCGCCAAG TCTAGGAAGCTCGCCGGCTTTGGAAATGATCAATGTATCCCATAACAATCTCGAAGGTCCGGTTCCTTCCAATGGCATGTTTACTGCTATAAACCCTAAT GATCTGGTAGGAAACCCTAGCCTTTGCGGCGGGGTACTCCCACCGTGTTATTCTTCGATGCCTCACACCTCAAAGCAATATCAAAATAAGCTCCACATCC ATCGCATTCTCCTCGGACTTATCGTGGGCATTTCCGTAATTGTAAGTCTCGGCATTGCATACTTCGCCGGTAGATTGGTGTACAGGAGGTGGTACCTGTG CAACAGTTTCTTCGACGATTATTTCAACAAGAGTACCGGAGGAGAATGGCCGTGGACATTAGTAGCATTCCAGAGGCTCAGCTTCACTAGCAACGACATT CTGACTAGCATCAAGGAGTCGAACATCATCGGCATGGGAGGATCTGGAATCGTCTACAAAGCTGGACCAGTGGCGGTGAAGAAGCTATGGAGAACAGAAC CTGACATTGAGAATGGCGGAGATGACCTATTTAAAGAGGTCAGCCTTCTCGGGAGGCTCCGACATAGGAACATTGTGAAGGTGTTAGGGTATCTGCACAA CGAAAAAGACGTGATGATGATTTATGAGTACATGCCGAACGGAAACTTAGGAGATGCCTTGCATAGCAAGGAAGAATCCGAGAGGTTGCTTGTGGATTGG GTTTCGAGGTATAACATAGCAGTTGGAGTCGCTCAGGGACTGCATTACCTCCACCATGATTGCCATCCTCAAATTATCCATCGCGACATCAAGTCCAACA ACATCCTGCTTGATGCTAATCTCGATGCAAGGATTGCCGATTTCGGGCTGGCGAGAACGATGGCTCATAAGAACGAGACCGTCTCGATGGTGGCTGGATC TTACGGCTACATTGCACCTGAATATGGATACACACTGAAGGTTGATGAGAAGAGCGACATATACAGCTTTGGAGTCATGCTTTTGGAGCTCCTGACTGGG AAAATGCCTATTGAGCCTGCATTTGGAGAATCTGTTGATATTGTGGAATGGATCAGAACCAAGATGAGAAACAATAAACCATTGGAAGAAGTACTTGACT CGACCATTGCGGGAAAATGCAAGCATGTTCAAGAGGAGATGCTTCTGGTTCTACGAATCGCGATTCTGTGCACCGCAAAACTTCCGAAGGAGAGGCCATC AATGAGGGACGTCATAACAATGCTTGGAGAGGCAAAGCCAAGAAGGAAAAGCATTTCTCACATCTCTACCAAAGAGAAGCCTATCTTTAGCAACTCCCCA GTTATAGGCCTTCTGTAA
AA sequence Show only first row Show all	>Lus10000814 pacid=23181276 polypeptide=Lus10000814 locus=Lus10000814.g ID=Lus10000814.BGIv1.0 annot-version=v1.0 MEASMLIFFIGCCFSLAVLAKGAVDNEVSALLAMKSSLVDSSNLLADWTLEGNSHCRWTGVSCNSRGFVERLDLSNMNLTGRISDRIQELKGLAFLSVSN NGFASAMPESLGNLTSLKTVDFSMNNFIGRFPTGLGLVPGLTSVNASSNDFSGVLPEDLGNATLLESLDFRGSFFQGSIPGSFSNLQKLKFLGLSGNNLT GKLPKEIGRMTSLETIILGYNNFEGEIPLEIGNLTNLRYLDLAVGSMGGQIPAELGKLRKLTTVFLYRNNFTGKIPPELGSIQTLVMLDLSDNQISGEIP LEIAELKNLELLNLMRNNLTGSIPSQLGNLTKLQVLELWRNNFVGSLPTNLGKNSPLQWLDVSSNFLSGTIPTSLCDSGNLTKLILFKNSFTGSIPTSLS TTCKSLVRVRMQENLLSGAIPVGFGTLPWLQRLELANNNFTGQIPDDLSLSTSLNFIDVSGNHLESSLPYNILSIPTIQTFVAAGNSLQGKIPAQFQDCP SLSSLDLSNNHFTGRLPESIASCEKLVNLNLRNNQFSGGIPNAFSRMPTLSILDLSNNSLTGRIPPSLGSSPALEMINVSHNNLEGPVPSNGMFTAINPN DLVGNPSLCGGVLPPCYSSMPHTSKQYQNKLHIHRILLGLIVGISVIVSLGIAYFAGRLVYRRWYLCNSFFDDYFNKSTGGEWPWTLVAFQRLSFTSNDI LTSIKESNIIGMGGSGIVYKAGPVAVKKLWRTEPDIENGGDDLFKEVSLLGRLRHRNIVKVLGYLHNEKDVMMIYEYMPNGNLGDALHSKEESERLLVDW VSRYNIAVGVAQGLHYLHHDCHPQIIHRDIKSNNILLDANLDARIADFGLARTMAHKNETVSMVAGSYGYIAPEYGYTLKVDEKSDIYSFGVMLLELLTG KMPIEPAFGESVDIVEWIRTKMRNNKPLEEVLDSTIAGKCKHVQEEMLLVLRIAILCTAKLPKERPSMRDVITMLGEAKPRRKSISHISTKEKPIFSNSP VIGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08590			Leucine-rich receptor-like pro...		Lus10000814 [exp]	0	1
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	5.8	0.9207
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	5.8	0.9247
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	11.0	0.9161
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	12.0	0.9051
					Lus10024349 [exp]	12.6	0.9185
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10014262 [exp]	13.6	0.9101
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10013886 [exp]	15.2	0.8770
					Lus10037775 [exp]	15.3	0.8910
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	18.2	0.8740
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	21.0	0.9013

Compare expression of checked genes

Lus10000814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.