Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 65 / 1e-11 B3 Domain of unknown function (DUF313) (.1) AT2G31420 60 / 2e-10 B3 Domain of unknown function (DUF313) (.1) AT2G32645 59 / 3e-10 Domain of unknown function (DUF313) (.1) AT2G31720 50 / 2e-06 B3 Domain of unknown function (DUF313) (.1) AT2G24670 46 / 2e-05 B3 Domain of unknown function (DUF313) (.1) AT3G24850 45 / 7e-05 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038802 [exp] 69 / 5e-13 AT3G24850 69 / 1e-13 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 54 / 6e-08 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 50 / 5e-07 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 50 / 1e-06 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 47 / 2e-05 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 43 / 0.0002 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 40 / 0.0007 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031600 [exp] 91 / 4e-20 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 84 / 6e-18 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1) Potri.013G065401 [exp] 69 / 1e-13 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1) Potri.015G014200 [exp] 67 / 2e-12 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.015G014700 [exp] 67 / 3e-12 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 63 / 8e-11 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10000815 pacid=23181271 polypeptide=Lus10000815 locus=Lus10000815.g ID=Lus10000815.BGIv1.0 annot-version=v1.0 ATGTCGCTGCCGAAATACTATTTCTTGTCTGAGAGAACCTTGAGAGACCGAGATCAAGACCCCAAGATATTCGCAGAGAAGGCCGCCGAACAAGAACGTA ACATCCTCAAATGGGACACCGACGGTGGTTACGCCAAGCTGATTCAGGAATCCAGAGAAGCCGCCGGCCCCGGCAACGAAACCGCCGCCGAATTCCTCTT ACTTGATACTCTCTCCCACATGGCTGCCAAACGGTACTTCGAATTAGAACGAGAAAGGGAAGAAAAGGGAGAAATCAAAGAAGAAGTAGAAGAAGAAGAA GAAGAAGAAAGGGAAAGAAAATTGGCGGCGAAGAAGGAATTGAAACAAGAAGAAGAAGAAGAAACAGAGTATCGGCAGCGGAAACAGAGGAAGACGGCGG CGGTGAAGCGAAAGAGGAAATCACCGCGGAAAGGTGGGGGGACCACCAAGAAAGAGAAAAATCAGAGAATCGATTTTTCAGCAATCGGGCTGGACCCACC GCCACGTGACTTCGCTGACGTCATCAAGGAGCGAAACGTCGGCGTCCGGGATGTGAAGCTGGTGATAATGAAGGAGCTGTTCCAAACGGATCTGAGCTCT AACCACAACCGGTTTTCAATGCCGGCGTTGCAGATCATCGACGGCGATTTTACTACGGCGGAGGAGGACGCCTGCTTCTCCGGGATCAACCCGCCAGGAG TCCCTGTCTTGCTGATTGGGCCGACGGAGGATGAAACGACTGAGATGAATCTGAAGCGGTGGCCGATCAACAAGTCGATCTCGTACGTGCTGAACAAGAA TTGGATGTCGCTGGTGAGAAAGTTCCCGGAAGTGTTTAGAAAGAGGACTATTGTTCAGCTCTGGTCATTCCGGACGGCGAACGGCGAACTCAGATTTCAG ATCCACATGATTAGGCAGCTACCTACCAGTTCCGGGTCGGATGTTCAGCCCGCCGGGATCGCATCAGGGTCGGGTGGAAGCGGTGGGGAAAGTAATAATC ATGACGGTGACGTGAGCGGAGGCAGCGATGGAAGCGGGAGGCCGACTAGCAGCGGGACGGAAGACGATGATTTGTCTCCGCCGCCGATTCGACGTAGGTT ATTACCCCCGCCGCCAATGTGA
AA sequence Show only first row Show all	>Lus10000815 pacid=23181271 polypeptide=Lus10000815 locus=Lus10000815.g ID=Lus10000815.BGIv1.0 annot-version=v1.0 MSLPKYYFLSERTLRDRDQDPKIFAEKAAEQERNILKWDTDGGYAKLIQESREAAGPGNETAAEFLLLDTLSHMAAKRYFELEREREEKGEIKEEVEEEE EEERERKLAAKKELKQEEEEETEYRQRKQRKTAAVKRKRKSPRKGGGTTKKEKNQRIDFSAIGLDPPPRDFADVIKERNVGVRDVKLVIMKELFQTDLSS NHNRFSMPALQIIDGDFTTAEEDACFSGINPPGVPVLLIGPTEDETTEMNLKRWPINKSISYVLNKNWMSLVRKFPEVFRKRTIVQLWSFRTANGELRFQ IHMIRQLPTSSGSDVQPAGIASGSGGSGGESNNHDGDVSGGSDGSGRPTSSGTEDDDLSPPPIRRRLLPPPPM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10000815 [exp]	0	1
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	6.9	0.6765
AT2G35658			unknown protein		Lus10000594 [exp]	7.5	0.6294
AT5G48290			Heavy metal transport/detoxifi...		Lus10025180 [exp]	7.9	0.6680
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10020763 [exp]	26.6	0.6012
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006704 [exp]	26.7	0.5630
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	29.2	0.6332
AT2G34930			disease resistance family prot...		Lus10000220 [exp]	32.0	0.5211
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006702 [exp]	43.5	0.5334
					Lus10035698 [exp]	61.0	0.5515
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	68.1	0.5471

Compare expression of checked genes

Lus10000815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.