Plant FIBer expression Database

Lus10000816 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027950
[exp]
556 / 0 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10000816 pacid=23181278 polypeptide=Lus10000816 locus=Lus10000816.g ID=Lus10000816.BGIv1.0 annot-version=v1.0
ATGGCGACGGCGACCACAACGATTGCCGGCGGGGAAGCAGAGTCATTACACAAACAACACATGACCTGGTGCTTACTATCCCAACTCTCCTTCAACCTAT
CAATCTTCCTCTTCAAACTCCCACCGTTCTCCATCCCAATCCTCATGATCGGCTGGATAGCCGCCATGGTATTCACATACACCCGCAACGATTCACTCCA
CCATAGCCCTAAACGACCCCGCATCGGACGATTCAAGAGGACTGCTCTCGAGGTCGCCTGTTTGCTCGCCGCCATGGCGACGAGATACTTCTACGATCCG
TACATCAACATCGTCAACAAACAGCTCGTAACGTATTACTACGCTGTCTTAATCTTGGCCACGCATCAGGTTTATACGCATCTCAAGTCCTTCTGGGGAG
TCCCTGATTTGAAATTCAGGGACCTCTGGTCGGTGATCGTTATGCAGAGCTTGGTTTATTGGATGCCGACCGAGTTGATGGCTGCGTCCGCTCTTGCAGT
GTGCTTCGCCGCGATTTCGTGTAGGTACGAGTCGTTGGATGATCGGGAGAGTGTCATCCCTGATCCGTTTGGGAGGTTTCTAGGGTTTGGTGTGGCGATT
GCGGCGTTTGGGTATCCAATGTTTCTTTTGGTTGATAGTTACCAGGAGGGTGTGGCTGGAGACGAGAAAAGATTGGGGTTGTGGGGATTGAAAGCTGAGG
TACAGTCAGGGTTTAAGCACTCTTTGATGACGAGTTTGGTTCTGTTCTGCACTTTGATTGTGCAGTGGATAGACACTAAGGTCTATAAGGATGGATTGAT
GGAGAAGAAGATGAAGAAGAAGGAACAAGTGAAGCCTGAGCCGATTGGGATTCATAAGGAGTCTGTGGAGCCTCCCAAAACAGCTGCTGCTACTGATCCT
TCCCCTGAAGCCAAGACTGATTATGAAGTCCGCAAGAGTAAAGAAGAATGA
AA sequence
>Lus10000816 pacid=23181278 polypeptide=Lus10000816 locus=Lus10000816.g ID=Lus10000816.BGIv1.0 annot-version=v1.0
MATATTTIAGGEAESLHKQHMTWCLLSQLSFNLSIFLFKLPPFSIPILMIGWIAAMVFTYTRNDSLHHSPKRPRIGRFKRTALEVACLLAAMATRYFYDP
YINIVNKQLVTYYYAVLILATHQVYTHLKSFWGVPDLKFRDLWSVIVMQSLVYWMPTELMAASALAVCFAAISCRYESLDDRESVIPDPFGRFLGFGVAI
AAFGYPMFLLVDSYQEGVAGDEKRLGLWGLKAEVQSGFKHSLMTSLVLFCTLIVQWIDTKVYKDGLMEKKMKKKEQVKPEPIGIHKESVEPPKTAAATDP
SPEAKTDYEVRKSKEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000816
[exp]
0 1
AT4G17250 unknown protein Lus10028936
[exp]
6.6 0.8355
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10022525
[exp]
9.0 0.8342
AT5G45660 unknown protein Lus10002778
[exp]
13.5 0.8216
AT1G79230 STR1, ATRDH1, A... ARABIDOPSIS THALIANA RHODANESE... Lus10031753
[exp]
15.3 0.8192
AT4G33430 SERK3, RKS10, E... RECEPTOR KINASES LIKE SERK 10,... Lus10025358
[exp]
15.7 0.8348
AT5G18610 Protein kinase superfamily pro... Lus10023473
[exp]
17.0 0.8147
AT2G01470 ATSEC12, STL2P SEC12P-like 2 protein (.1) Lus10035728
[exp]
23.1 0.8139
AT5G39950 ATTRXH2, ATTRX2... Arabidopsis thioredoxin h2, th... Lus10030666
[exp]
23.8 0.8314
AT2G31410 unknown protein Lus10035165
[exp]
30.3 0.8077
AT2G29960 CYP19-4, ATCYP5... CYCLOPHILIN 19-4, ARABIDOPSIS ... Lus10018238
[exp]
39.1 0.8026

Lus10000816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.