Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18480 327 / 7e-109 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027949 [exp] 333 / 6e-112 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G049100 [exp] 418 / 1e-144 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000818 pacid=23181270 polypeptide=Lus10000818 locus=Lus10000818.g ID=Lus10000818.BGIv1.0 annot-version=v1.0 ATGGAGAGGCTATCTACCCTTTACAATGCAGATGTTGGTCTCTACATGCTTGCTAACAAGTGGATGGTTGATGAGAGTGAACTCCGTGTTATACACTATA CTCTTGGTCCCCTTAAACCTTGGGATTGGTGGACTTCCTGGCTGCTGAAACCGGTTGACGCGTGGCAGAACATCCGTGTGAAACTTGAAGAAACCCTCCC TGGCACAGGGGGTGGCAAGAATCCCAAAGACCAACTACTTGTCAAATTTCTTTTCTTTTTGCCGCTATGTGCCCTAGCCTTCTGCTACTATCAATCTTCT ATTCAGGCTCGCTTGTTCTGTAGGAATTCTGTATACGAACATATCAGACACTTGTATTACAAGATAAGATCGAATGGAGCTCTTGCCTACAACAGTGTTT CTTCATCATTGCCCATCAGTTATACACAACAGTGCAAGTTCCCTGCTTATCTCGGCGGACTTTCTATAGCTGCATGTTTCATGGCTGCATTGATGTCCCT CGCGTTTAGTATGGCCATCGTGCCACATCAAGTAATGCCATGGACTGGTTTGCTTTTGATGTATGAGTGGACCTTCACAATCTTCGTGGTTTTATATGGA GGTTTTCTCCATTTGATCTACCTATGGGGAAGGAGAGCAGCGATGCAAACAGCATCGCCTTCCTCTGATTCCGAATCATTCTATGACTCAGGAAAAGGTC ATCAGCGGCTGGCTTCATCTCGTGAACTTGATGCAGGGTACTATTGGCTAGGGATGGCACTTTTGGCCATTGGAGTCCCGGCTTTGCCTCATATGGTCGG TGTTACTGCACTATTCGCGAGGTTGGGGCTGATTGTTGCTGGAGGGATGATTCTTGCATCGTTCATGACATATGCAGCAGAGCATCTTTCAATCAGATCG TACTTGAAAGGCTTTGAAGACCGGGATTTAACACGAGGGAGGAGCTTGTGTTTTGCATGA
AA sequence Show only first row Show all	>Lus10000818 pacid=23181270 polypeptide=Lus10000818 locus=Lus10000818.g ID=Lus10000818.BGIv1.0 annot-version=v1.0 MERLSTLYNADVGLYMLANKWMVDESELRVIHYTLGPLKPWDWWTSWLLKPVDAWQNIRVKLEETLPGTGGGKNPKDQLLVKFLFFLPLCALAFCYYQSS IQARLFCRNSVYEHIRHLYYKIRSNGALAYNSVSSSLPISYTQQCKFPAYLGGLSIAACFMAALMSLAFSMAIVPHQVMPWTGLLLMYEWTFTIFVVLYG GFLHLIYLWGRRAAMQTASPSSDSESFYDSGKGHQRLASSRELDAGYYWLGMALLAIGVPALPHMVGVTALFARLGLIVAGGMILASFMTYAAEHLSIRS YLKGFEDRDLTRGRSLCFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	0	1
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	1.4	0.9469
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	2.4	0.9373
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	2.6	0.9489
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10026041 [exp]	4.9	0.9345
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10034705 [exp]	6.7	0.9293
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10043025 [exp]	6.8	0.9217
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	7.7	0.9341
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	10.2	0.9295
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	12.0	0.9234
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	12.7	0.9184

Compare expression of checked genes

Lus10000818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.