Plant FIBer expression Database

Lus10000819 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G32470 549 / 0 Haem oxygenase-like, multi-helical (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027948
[exp]
857 / 0 AT5G32470 700 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021977
[exp]
664 / 0 AT5G32470 728 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10042514
[exp]
660 / 0 AT5G32470 727 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021976
[exp]
101 / 5e-25 AT5G32470 94 / 3e-23 Haem oxygenase-like, multi-helical (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G022700
[exp]
656 / 0 AT5G32470 756 / 0.0 Haem oxygenase-like, multi-helical (.1)
Potri.013G049300
[exp]
637 / 0 AT5G32470 766 / 0.0 Haem oxygenase-like, multi-helical (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0230 HO PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Representative CDS sequence
>Lus10000819 pacid=23181269 polypeptide=Lus10000819 locus=Lus10000819.g ID=Lus10000819.BGIv1.0 annot-version=v1.0
ATGCTGTCGTTGACCCCAATCAAAACCCCAGTCACAACCTTGCTATTCAGTCGCTTCATCCATTATCCCTCCACCGTCGCCGCCCGTCGATCGACTGGTC
TCTTATCCTCCTCCTCCTGCTTACTGGCCACGTTGAGACGGCGATCCTTCTCAATCCCTACCATGCTACCGATCCTTTTAACTCTCCTATCCTCGTCTGC
CATTTCCAGCTCCTCTGCAACTACTCCCGGAAGCAGCAACTCCGACGACGGGTTTTCCGCCAAGTTGTGGATGAAGTCCCGCCGCGAGGTGCATTTCGCG
ATGTATACTCCTTTCGTTGTGTGTTTGGCTTCCGGCAATTTGAAGATCGAGAGCTTCAGGCATTACATCGCTCAGGATTTCCACTTCCTCAAAGCCTTTG
CTCATGCATATGAATTAGCTGAAGAATGCGTTGATGATGATGATGCAAAGCTAGCCATTGCTGACTTGAGAACGGCTGTTCTGGAGGAGCTGACGATGCA
TAATTCGTTTGTGCAGGAATGGGATATTGACCCTGCTAAGGAAGTTGTTGCAAATTCTGCAACTGTCAGATACACAGAATTCTTATTGGCTACAGCATCT
GGAAAAATTGAAGGAGTGAATGGTCCTAGTAAACTGGCTACTCCTTTGGAGAGGAAAAAAGTTGCGGCTTACACTCTTGGTGCCATGACACCTTGCATGC
GGCTTTATGCTTTTCTGGGGAAGGAATTACAAGCGTTTGTCGATGCAACTTTTGGCAGCCACCCATATAAGAAGTGGATTGAAAATTATTCGTGTGATGG
TTTTCAAGCATCTGCTTTTCAAACTGAAGACTTGCTGGATAAACTTGCTGTCTCTTTGACAGGAGAAGAGCTAGATGTCATTCAGAAGCTTTATCAGCAA
GACATGAAACTTGAAACCGAGTTCTTCAGTGCACAGCCAATCATTCAGCCTACTGTAGTGCCTTTGACAAAAGAGCACAACACTGGCAAAGATCGCCTTG
TGACTTTCACTGATTTTGATTTGACATGTACTGTTGTGGACTCATGCGCAGTCTTGGCTGAGATTGCTATCATAACTGAAAATCAAATTACTCGAGCTGA
GTTGAAGAACACATGGGGTATACAGAGGAGTATGAACAGTGCATGGAAAGTGTATTACCCTCTAAAAAAGAGCGATCGAAGAGCAAACTCTAGAGTGATC
AAGTCAGGAGTCCTCAAAGGTATGAATCTCAAAGACATAAAACAAGCCGGCGAGAGAATGATTCTTCAAGATGGCTGCAGCAGTTTCTTCCGGAAAATCG
CAGGGAACGAGAAGCTGAATTCAAATGTACATGTGCTGTCATTTTGTTGGTCTGCTGATCTCATTAGATCATCTTTCTCATCAGAGGGTTTGGATGTTCT
CACTGTTCATGCAAATGACCTGATTATCGAAGAATCAGTAACCACCGGAGAGATTGTCAACAAGGTCGAGTCCCCATTGGACAAGGTCCAAGCTTTCCGG
GACCGGGACATATTAAAGAAGAATTACGAAGACGATAAAAGGAATCGCACTGTTTACATCGGGGACTCCGTGGGCGACTTGCTCTGCCTGCTTCAAGCAG
ATGTAGGGATTGTTATCGGTTCTAGCTCGAGCCTAAGAACAGTAGGAAGTCGGTTTCTTTCGTACCGTTGTTCCGGGGAGTACTGGAAAAGCAGAGAGAA
TGTAGTAGTGAAGGAAGCTGCTACTGCTCCATGGGGGAGAGCCTGTCTGGGACTTTGTACACAGTTTCTAGCTGGGCTGAGATAG
AA sequence
>Lus10000819 pacid=23181269 polypeptide=Lus10000819 locus=Lus10000819.g ID=Lus10000819.BGIv1.0 annot-version=v1.0
MLSLTPIKTPVTTLLFSRFIHYPSTVAARRSTGLLSSSSCLLATLRRRSFSIPTMLPILLTLLSSSAISSSSATTPGSSNSDDGFSAKLWMKSRREVHFA
MYTPFVVCLASGNLKIESFRHYIAQDFHFLKAFAHAYELAEECVDDDDAKLAIADLRTAVLEELTMHNSFVQEWDIDPAKEVVANSATVRYTEFLLATAS
GKIEGVNGPSKLATPLERKKVAAYTLGAMTPCMRLYAFLGKELQAFVDATFGSHPYKKWIENYSCDGFQASAFQTEDLLDKLAVSLTGEELDVIQKLYQQ
DMKLETEFFSAQPIIQPTVVPLTKEHNTGKDRLVTFTDFDLTCTVVDSCAVLAEIAIITENQITRAELKNTWGIQRSMNSAWKVYYPLKKSDRRANSRVI
KSGVLKGMNLKDIKQAGERMILQDGCSSFFRKIAGNEKLNSNVHVLSFCWSADLIRSSFSSEGLDVLTVHANDLIIEESVTTGEIVNKVESPLDKVQAFR
DRDILKKNYEDDKRNRTVYIGDSVGDLLCLLQADVGIVIGSSSSLRTVGSRFLSYRCSGEYWKSRENVVVKEAATAPWGRACLGLCTQFLAGLR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G32470 Haem oxygenase-like, multi-hel... Lus10000819
[exp]
0 1
AT5G40660 ATP12 protein-related (.1) Lus10000142
[exp]
10.4 0.7595
AT1G09820 Pentatricopeptide repeat (PPR-... Lus10032789
[exp]
21.8 0.7365
AT2G25840 OVA4 ovule abortion 4, Nucleotidyly... Lus10005494
[exp]
24.0 0.7304
AT3G58590 Pentatricopeptide repeat (PPR)... Lus10020137
[exp]
25.9 0.6773
Lus10027424
[exp]
31.1 0.6331
AT2G22650 FAD-dependent oxidoreductase f... Lus10036320
[exp]
34.0 0.7295
AT5G20060 alpha/beta-Hydrolases superfam... Lus10043294
[exp]
34.9 0.7263
AT3G09250 Nuclear transport factor 2 (NT... Lus10022605
[exp]
43.5 0.7269
AT2G40430 unknown protein Lus10037530
[exp]
48.1 0.7196
AT1G27150 Tetratricopeptide repeat (TPR)... Lus10036690
[exp]
52.6 0.7069

Lus10000819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.