Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18520 373 / 4e-126 Lung seven transmembrane receptor family protein (.1) AT3G09570 365 / 5e-123 Lung seven transmembrane receptor family protein (.1) AT5G42090 346 / 2e-115 Lung seven transmembrane receptor family protein (.1) AT5G02630 308 / 5e-101 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025283 [exp] 370 / 2e-124 AT5G18520 697 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10008267 [exp] 347 / 7e-116 AT5G42090 690 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10009065 [exp] 313 / 5e-103 AT5G18520 626 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10033235 [exp] 293 / 1e-96 AT5G42090 520 / 0.0 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G049500 [exp] 471 / 4e-164 AT5G18520 430 / 2e-148 Lung seven transmembrane receptor family protein (.1) Potri.016G081300 [exp] 377 / 2e-127 AT5G18520 609 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G214900 [exp] 373 / 5e-126 AT5G18520 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G147700 [exp] 347 / 8e-116 AT5G42090 639 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G083100 [exp] 343 / 4e-114 AT5G42090 642 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10000821 pacid=23181272 polypeptide=Lus10000821 locus=Lus10000821.g ID=Lus10000821.BGIv1.0 annot-version=v1.0 ATGAAAACAACCGCCGTTCCCAATCCGCTTCTCCACGCCGTTACCATCCTCTTAACCATCCCAATCTGTTCATCCGAGATCAAAAACACCCAAATCACCG CCGATTCCCGCTCCCTCATCCTCTTCGAACAGTTCGGCTTCTCCGGCGACGGCCACGTCGACATCTCCGTCACAGACGTCTCCTGGCCACACAACCCCAA TAAATCCCATCTCAACCTCTCCAATCTCGCTTTCTTCCTAACCAAAGACATATCCACAATCCTCAATGACTCCTCCGCCTCCTCCTCCGACGCCTCCTCC GCCGCCGCCGCCACCGCCAGAGCCTCCGCCACCTCCTCTCCCTGCGTCCTCTCCAGCCAATTCGCCAAAATCATCTTCCGATTCAACAACCTAACCGCCA ATTCTTCCTACAACGGATCAATCTCCATCTCCGATCCCGGATCCTACAACCTAATGTTCGGAAACTGCGACCCCGAATTCCAGATCTCGATGCACGTACA CACCGAGATGTACACCATAAACAGAGGATACAAATTCTACCTCCCCGCGGGTCAATCGGCGCTTCCGTACATATACCTGGGGTTCTTCGGGATCTACAAT GCGTTTTTCTTTAGCTGGTGCTTTCTGATTTGTTGCAGACACGTCGAGAGGTGCAAGAAAATTCACGTGATCATGGCGGCTCTGCTTCTGGTGAAGGCGA TGAAGCTGATCTGTGCGGCGGAGGATAAGATCCACGTGGCGAGATCTGGGACCCCGCACGGATGGGACGTGGTGTTTTACGTGTTTGGGTTTATAAAAGG GACGATGATGTTCACCGTTATTGTGCTGATAGGGACGGGATGGTCTTTTCTGAAACCTTACCTTCAGGAGCGGGAGAAGAGCGTTCTCATGGTGGTTGTC CCTCTCCAGGTGCTGGAAAACGTGGCAAATGTGGTGATCGATGAGACTGGACCGGCGACGAAAGACTGGGTGGCGTGGAACGAGATCTTCCTGCTGATGG ACATGCTATGCTGCTGCGCGGTGTTCATGCCTATCCTGTGGTCGATAAGGACCCTGAGAGAGGCATCCAAGAGCGACGGCAAGGCCGCGAGGAATCTGGA GAAGCTGAGCTTGTTCAGGCAGTTCTACATTGTGGTGGTGGCCTACTTGTATTTTACCAGAGTGGTGGCGCCGGCGATTGGGTCGATGGTGGATTATAGG TTCGAGTGGGTTAGGGTTGTGTTGGGTGAAATAGGGAGCTTGGTGTTTTATGTGTTTGTGTTTTATAACTTCCAGCCTACAGAGAAGAACAATCCTTATT TGGGTGTTGATGGTGATGATGATGATCGTGATCGTGTGGCTGGACAGTTGTTGGGAGATCGTGATGATCGGTCGGTTTTGTACCGATAA
AA sequence Show only first row Show all	>Lus10000821 pacid=23181272 polypeptide=Lus10000821 locus=Lus10000821.g ID=Lus10000821.BGIv1.0 annot-version=v1.0 MKTTAVPNPLLHAVTILLTIPICSSEIKNTQITADSRSLILFEQFGFSGDGHVDISVTDVSWPHNPNKSHLNLSNLAFFLTKDISTILNDSSASSSDASS AAAATARASATSSPCVLSSQFAKIIFRFNNLTANSSYNGSISISDPGSYNLMFGNCDPEFQISMHVHTEMYTINRGYKFYLPAGQSALPYIYLGFFGIYN AFFFSWCFLICCRHVERCKKIHVIMAALLLVKAMKLICAAEDKIHVARSGTPHGWDVVFYVFGFIKGTMMFTVIVLIGTGWSFLKPYLQEREKSVLMVVV PLQVLENVANVVIDETGPATKDWVAWNEIFLLMDMLCCCAVFMPILWSIRTLREASKSDGKAARNLEKLSLFRQFYIVVVAYLYFTRVVAPAIGSMVDYR FEWVRVVLGEIGSLVFYVFVFYNFQPTEKNNPYLGVDGDDDDRDRVAGQLLGDRDDRSVLYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18520			Lung seven transmembrane recep...		Lus10000821 [exp]	0	1
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	2.8	0.8632
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	6.7	0.8562
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	10.7	0.8349
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	10.8	0.8593
AT2G28780			unknown protein		Lus10024409 [exp]	11.1	0.8474
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	13.0	0.8457
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	15.0	0.8219
AT2G46640			unknown protein		Lus10005993 [exp]	17.2	0.8209
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10024328 [exp]	20.0	0.7944
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	23.6	0.8087

Compare expression of checked genes

Lus10000821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.