Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 87 / 2e-21 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT3G17140 53 / 2e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G64620 46 / 3e-06 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT3G17150 42 / 5e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G38610 42 / 0.0001 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027947 [exp] 228 / 5e-77 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 121 / 5e-35 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 117 / 5e-33 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017013 [exp] 108 / 7e-30 AT1G47960 112 / 4e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017076 [exp] 100 / 2e-26 AT1G47960 88 / 9e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037792 [exp] 99 / 3e-26 AT1G47960 91 / 1e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017040 [exp] 95 / 2e-24 AT1G47960 92 / 3e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002738 [exp] 87 / 2e-21 AT1G47960 67 / 5e-14 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10003530 [exp] 67 / 5e-14 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063000 [exp] 101 / 4e-27 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.009G083500 [exp] 93 / 6e-24 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.008G102600 [exp] 70 / 5e-15 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G122000 [exp] 54 / 5e-09 AT5G64620 53 / 7e-09 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G109700 [exp] 52 / 1e-08 AT1G47960 46 / 2e-06 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.006G134900 [exp] 50 / 1e-07 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.016G001600 [exp] 47 / 1e-06 AT5G64620 82 / 9e-20 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.007G108301 [exp] 44 / 9e-06 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.013G012800 [exp] 41 / 9e-05 ND / Potri.001G127500 [exp] 41 / 0.0002 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10000822 pacid=23181268 polypeptide=Lus10000822 locus=Lus10000822.g ID=Lus10000822.BGIv1.0 annot-version=v1.0 ATGGCGCCAAACCCAGCACAACTCACCGGCGCTCTGACCTCCGCCGCCCTCTTTCTCATCATCATAACAACAACCACCACCACCCACGCCTCCTCCTCCA CCTTCGCCTCCGCCAGCAATCTCATCACACAAACATGCAAGCAGACCCCAGATTACAACCTCTGCGTATCCTCCCTCACCGCCGACCCCCGCGGCCCGAA AGCAAATGACGTCCAGACCCTCGCCCTCATAATGATCGACGTAGTCAGCAACAAGGCAGCCGCAACTTCCGATGAAATCAAGCGGCTCGTTAGTAAAGGC AATCCAGCGTTGAAGGAGCCGCTGATGGAATGCGCCGATAAGTATAAGGTCGTCGTCAATGTCGACGTCGGCGTGGCGATCAAAGCGGTGCGTATAGGGA ACCCGGGTGCCGGAGAAGGAGCGATGAACGACGCTGGGAATAAGTCTGATTCGTGCGAGCGTGGATTTCAAGGATTGAAGTCGCCGTTGGCTGACATGAA TCATGCTGTACGTAGCGTTGCTGATGTGGCATCGGCTATTATTAGCCTGTTGATTTGA
AA sequence Show only first row Show all	>Lus10000822 pacid=23181268 polypeptide=Lus10000822 locus=Lus10000822.g ID=Lus10000822.BGIv1.0 annot-version=v1.0 MAPNPAQLTGALTSAALFLIIITTTTTTHASSSTFASASNLITQTCKQTPDYNLCVSSLTADPRGPKANDVQTLALIMIDVVSNKAAATSDEIKRLVSKG NPALKEPLMECADKYKVVVNVDVGVAIKAVRIGNPGAGEGAMNDAGNKSDSCERGFQGLKSPLADMNHAVRSVADVASAIISLLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10000822 [exp]	0	1

Compare expression of checked genes

Lus10000822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.