Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64780 284 / 2e-94 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G13510 254 / 6e-83 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT3G24300 243 / 1e-78 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT4G28700 239 / 4e-77 AMT1;4 ammonium transporter 1;4 (.1) AT3G24290 236 / 8e-76 AMT1;5 ammonium transporter 1;5 (.1) AT2G38290 47 / 3e-06 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004760 [exp] 382 / 6e-136 AT1G64780 489 / 5e-173 ammonium transporter 1;2 (.1) Lus10023705 [exp] 233 / 2e-74 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10018229 [exp] 214 / 1e-67 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1) Lus10004403 [exp] 204 / 1e-63 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10040677 [exp] 191 / 2e-62 AT1G64780 225 / 6e-72 ammonium transporter 1;2 (.1) Lus10028397 [exp] 53 / 3e-08 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 48 / 2e-06 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10041851 [exp] 45 / 2e-05 AT2G38290 430 / 2e-149 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 44 / 3e-05 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023600 [exp] 289 / 1e-96 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.008G173800 [exp] 280 / 1e-92 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.010G063500 [exp] 265 / 7e-87 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255100 [exp] 254 / 9e-83 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1) Potri.002G255000 [exp] 244 / 5e-79 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.009G045200 [exp] 206 / 1e-64 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1) Potri.005G106000 [exp] 47 / 3e-06 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 44 / 4e-05 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10000823 pacid=23181275 polypeptide=Lus10000823 locus=Lus10000823.g ID=Lus10000823.BGIv1.0 annot-version=v1.0 ATGGTTGGCCACTGGACTGTAACCGATGTTTGTAACGGTTTGCTTGGTGGGTTTGCCGCTATAACCTCGGGTTGCTCAGTGGTCGAACCATGGGCGGCGA TCATTTGCGGGTTCGTAGCTGCCTGGGTTCTAATCGGGTTCAACAAGCTAGCCGAAATATTCAAATACGACGACCCGCTCGAAGCAGCCCAGTTACATGG CGGGTGTGGCGCGTGGGGATTGTTATTCACCGGACTATTCGCGACCAAGAAATTGGTCAACGAGGTTTACCCGGGCAACCCTAGTCGACCATTCGGGTTG TTTATGGGCGGAGGAGGGAAGCTGTTGGCCGCCCAAGTTGTGCAGATATTGGTGATCGTTGGTTGGGTGAGCGCTACGATGGTACCACTGTTCTACGGGC TTCACAAGCTGAACTTGTTGAGGATATCGGGGGAGGATGAGGTGGCAGGGATGGATATGACTAGGCACGGAGGGTTTGCTTACGCGTACACCGACGAGGA TGACCTGTCACTGAAGCCTACAGGATTCATGATGAGGAGGATTGAGCCTAGCAATGGAAGCACCCCCAACCTGAACCAGAGTCCCTCTGGGAACAATGTG TGA
AA sequence Show only first row Show all	>Lus10000823 pacid=23181275 polypeptide=Lus10000823 locus=Lus10000823.g ID=Lus10000823.BGIv1.0 annot-version=v1.0 MVGHWTVTDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGFNKLAEIFKYDDPLEAAQLHGGCGAWGLLFTGLFATKKLVNEVYPGNPSRPFGL FMGGGGKLLAAQVVQILVIVGWVSATMVPLFYGLHKLNLLRISGEDEVAGMDMTRHGGFAYAYTDEDDLSLKPTGFMMRRIEPSNGSTPNLNQSPSGNNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10000823 [exp]	0	1
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10004760 [exp]	1.0	0.9757
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	1.4	0.9565
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	3.0	0.8892
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	9.5	0.7801
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	10.8	0.8168
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	49.4	0.7616
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	49.7	0.7179
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	59.3	0.7295
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	79.9	0.6713
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	97.0	0.6555

Compare expression of checked genes

Lus10000823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.